G161312


Basic Information

Item Value
gene id G161312
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28886972 ~ 28889126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218581
ATTTCAGCAAGAgtgtacaaataaaaatgctccaTAATTACAGCAATCAAATTCTGTAATGCTACCAATTTTGAAgttttttgtgtgacagtaatcatataaatatataaaacattaagacACACAATTTGGCATTCAGTTATAAGTTCAGTGCATTCaacaaatacattatatttgtGCTAGATTCCTAAATTCTACTACTAGTAGGTTCTTCTCTATTGTTGAATAGTTTATGGGTTGTGGTCTGGGTTTTGTTACTCTTTTATTCTGTGATGTTTTCCACTGAAAATCCACACATCACATTTTCTCTGAAATTCTCAAACTAGACTGCACAAACAAACCTCAAGCTGCATCAGACAGTTATTTACAGGAGAGGACAGGCAGAATCCTTTGCATTACATACAAATGTACTGACCAACACAtcccgtatttttcgcactataaggcacatttaaaatcttatgtatgaattctaccagttaggttgtaaggagcagtaaagcctctctgctgaagtacagcgttatacaggagcttcagtttagttctccagcactagctctttggccgtttagaggtgagtattatctggaacagcattagcattacccgctaaccacagcactatcCCTTTTGCCTTTTAGAGTGCATATATTGGACTGCGTGTTATCgtggtaaaacaagctacgtgagacaAACAACGACCTAATATCGCCCTGTCTTACTGGAATACTctgggtttctcagtgtagcgctgtcaggcagcattaaCCGCTCCCCCACCAATAAAtattcttttgtgacctctttaCTTTTTCACATCCAGGCTGGTTTGGATTTACGCAGGTTATCTCaactgatattaaagtttgtatgaagaaaaaacaaaaaactaaagacatctgttggaaaaaaaagaatacattttgcagcactgtgtgttcAAGAGAGTAGGATAAAGTGCAAACTAGTGTAAGAAGTAAGAAGATCTGCGGTATTACTTTTAGTCCACAAACACTTTCGACATATGATGCATATGACACCTCAGACCAAATGGTGTGACTTCTATTCTGTGAGGTAAAACTTGAGTTTCACTCTCCAGCGAGTGtcactctattttttttttttagcagagtaatgtttagagcaggggtcggcaattagttTTGGTCgtggccagatattttccaagcaattgtgtggcgggccacaaaaaaaatctgtttttggaaaattaagcaggtaaacccaggaagaaaggaaaaaaatgaataaataaacacacccctCCTCACGCTGCGATTAAACCCGAGTCGTTAGGATCGCGGTCCAATAtgctaccgctgccccggctagtaaACTGAGTTACAGCTGGAAAAAAACGCCTTATAATCGTTCATTATAGGTCAAACAACCACACGGACCAGATGTTTCACGCTTgcaggccacatctggccctaggccgcctattgccgacctatgGGTAAGACTCATCAGCTGCAGATGCTGCATTGTACTGCAGTACTACAGGGCTACACAGTGCTACATTTGGGAAAAGAGGTTTGAAATGGTTGGCTTGAAATGGTAGCATCACATTTCTGCATTAAGGTTGCTCTGTTACGCTGGAGCTCTAACAGGGCAGCCATGGTCTAAGGGCTAGATCATGTCTACACGACGCAGCACTGGACCTTTCAGATTGCTCGATGTTCATACTATACCTATTGCCCCACCATCCCTTTTGCCCCGACATGACTTTTGCCTAAAAaactctgcactgacctgtTCATGAGATCTTTGCCTAACTCATTTTTCTGTTCGCGAGGACAATTCTTGCCAGACACTGCtgttcacaatcattaccacccacagaaCTGTCTACTCTGGGTGGTAAtaccttctatgatgtattcctgacACGTGACTTTTTTGATCGAAGAATGTTATATATTCTTtgaataactttttaaataaacttttccTTAAACTCACGATCAGAAATCATCTGACATAATGGTGATAATTCAtgtcgccttgccatgagcacacaggCCTgagttcaacctcactcacttacagtgttcattttgacaggtgatctatatttatttttagtttttgactaaaaacattgtataataaaagtataatagtttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218581 True 2155 lncRNA 0.40 1 28886972 28889126

Neighbor

gene id symbol gene type direction distance location
arid3b LOC108439030,LOC108264089 coding upstream 27876 28768606 ~ 28859096 (+)
dhx36 dhx36 coding upstream 500555 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 603654 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 691258 28185750 ~ 28195714 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 702065 28180682 ~ 28184907 (+)
LOC103037946 LOC108439022 coding downstream 65591 28954717 ~ 28969395 (+)
LOC103022881 LOC108439021 coding downstream 128934 29018060 ~ 29063139 (+)
LOC103023184 NA coding downstream 244502 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 263170 29152296 ~ 29159185 (+)
LOC111194800 NA coding downstream 310323 29199449 ~ 29200211 (+)
G161314 NA non-coding upstream 172 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 122929 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 234663 28643321 ~ 28652309 (+)
G161243 NA non-coding upstream 492944 28366168 ~ 28394028 (+)
LOC111194734 NA non-coding upstream 851777 28030613 ~ 28035195 (+)
G161313 NA non-coding downstream 244 28889370 ~ 28890244 (+)
G161414 NA non-coding downstream 313227 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 318837 29207963 ~ 29208290 (+)
LOC111194801 NA non-coding downstream 321138 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 443985 29333111 ~ 29354291 (+)
fam219b fam219b other upstream 127965 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 262187 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1090468 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1767708 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1979345 26905244 ~ 26907627 (+)
G161331 NA other downstream 181694 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1464560 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1965432 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1985912 30875038 ~ 30878327 (+)
efhb NA other downstream 2695620 31584746 ~ 31605490 (+)

Expression


Co-expression Network