LOC103037190


Basic Information

Item Value
gene id LOC103037190
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28886911 ~ 28941387 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218655
ctgccaaagtcagagcacatctggctcttaaaagaAATGGCAAGTAAAAAGCTGATTTACAGGAACcataattttagtttatttgataTCCTGTTTATTGCTGACTGtgttgccaaaatagcaatgaacatgTTGTCTGTGGTCTAggtttttcagtcagtggccaCCAACAGTGGTTTCcgttgccaaaatagcaatacaccagaaatgtacctgaacacacctcatttcaggACTACAGCACCCATCAGCAAAGATATATTCGCAATTGCTGTCTCTATTTAAACTGTTGGCGGAGTGTAAGCCTTGCGcatggtgtaagatagggctctCAGTGTTAAAATTCACATCATCTGCATGTGCTGTATTTAGCCTTCTTATTTCCTattgcagtgaacacacactatTGTGCGCAATTATGGAATTCCTCTCTCCAACACTTCCTGCCCATAAAGAGAGGAAGCAGGGGACCATGCCCACTGATTGCTTTAAAGGCTGCAGATGTGGACACTCCAAAAGGTGCATGAGCAAAGGGACACCCAGGCATTACCTCATTTCAGTGAGGCACAGGGCAGCTTGAAAAACACCTAGGCATGTTTAATTTACGAGGTGTTATGTGTTTAAGTTAGCGATGTTAATTATTTGACAGCCTATTTTTTATAACGAAAAAGAGATAAGAACTTAAACTATGAATAAATTTATTCCACTTTCCATCAATGAACAAAAgcaaaattacaaattttaaGATTGACAGTGGCTCTACCACTTATTGAAGATAAACATTATTACAATAAGTTCAGCAGCTGCAGTCCCATGGATGTGCATCTGGACACAACTCTTTAGAATAAAGAGTTCCCAGTACAAATATGGAATATATGGAACGCAAGAACAGATATTTAAGCAAAAGTCAAGATTTGTTAGAAtgttaataacaaaaaacaaataagtatTTCTAACCTTGATACATTAGCATAATTTGCATGTAACAAAACTTTTGATacaaaaaatctcaaaataattacacatttaagatggtaacaaaaaaatattatatttattatatatttgattaaaatgtattagactaaaactagtttaagacttaaattactgaaatgtgactaaaactattatacttttattatacaatgtttttagtcaaaaactaaaaataaatatagatcacctgtcaaaatgaacactgtaagtgagtgaggttgaactcAGGcctgtgtgctcatggcaaggcgacaTGAATTATCACCATTATGTCAGATGATTTCTGATCGTGAGTTTAAggaaaagtttatttaaaaagttattcaAAGAATATATAACATTCTTCGATCAAAAAAGTCACGTgtcaggaatacatcatagaaggtaTTACCACCCAGAGTAGACAGttctgtgggtggtaatgattgtgaacaGCAGTGTCTGGCAAGAATTGTCCTCGCGAACAGAAAAATGAGTTAGGCAAAGATCTCATGAacaggtcagtgcagagttTTTTAGGCAAAAGTCATGTCGGGGCAAAAGGGATGGTGGGGCAATAGGTATAGTATGAACATCGAGCAATCTGAAAGGTCCAGTGCTGCGTCGTGTAGACATGATCTAGCCCTTAGACCATGGCTGCCCTGTTAGAGCTCCAGCGTAACAGAGCAACCTTAATGCAGAAATGTGATGCTACCATTTCAAGCCAACCATTTCAAACCTCTTTTCCCAAATGTAGCACTGTGTAGCCCTGTAGTACTGCAGTACAATGCAGCATCTGCAGCTGATGAGTCTTACCcataggtcggcaataggcggcctagggccagatgtggcctgcAAGCGTGAAACATCTGGTCCGTGTGGTTGTTTGACCTATAATGAACGATTATAAGGCGTTTTTTTCCAGCTGTAACTCAGTttactagccggggcagcggtagcaTATTGGACCGCGATCCTAACGACTCGGGTTTAATCGCAGCGTGAGGaggggtgtgtttatttattcatttttttcctttcttcctgggtttacctgcttaattttccaaaaacagattttttttgtggcccgccacacaattgcttggaaaatatctggccacGACCAAaactaattgccgacccctgctctaaacattactctgctaaaaaaaaaaaatagagtgaCACTCGCTGGAGAGTGAAACTCAAGTTTTACCTCACAGAATAGAAGTCACACCATTTGGTCTGAGGTGTCATATGCATCATATGTCGAAAGTGTTTGTGGACTAAAAGTAATACCGCAGATCTTCTTACTTCTTACACTAGTTTGCACTTTATCCTACTCTCTTgaacacacagtgctgcaaaatgtattcttttttttccaacagatgtctttagttttttgttttttcttcatacaaactttaatatcagttGAGATAACCTGCGTAAATCCAAACCAGCCTGGATGTGAAAAAGtaaagaggtcacaaaagaataTTTATTGGTGGGGGAGCGGttaatgctgcctgacagcgctacactgagaaacccagAGTATTCCAGTAAGACAGGGCGATATTAGGTCGTTGTTtgtctcacgtagcttgttttaccacGATAACACGCAGTCCAATATATGCACTCTAAAAGGCAAAAGGgatagtgctgtggttagcgggtaatgctaatgctgttccagataatactcacctctaaacggccaaagagctagtgctggagaactaaactgaagctcctgtataacgctgtacttcagcagagaggctttactgctccttacaacctaactggtagaattcatacataagattttaaatgtgccttatagtgcgaaaaatacgggaTGTGTTGGTCAGTACATTTGTATGTAATGCAAAGGATTCTGCCTGTCCTCTCCTGTAAATAACTGTCTGATGCAGCTTGAGGTTTGTTTGTGCAGTCTAGTTTGAGAATTTCAGAGAAAATGTGATGTGTGGATTTTCAGTGGAAAACATCACAGAATAAAAGAGTAACAAAACCCAGACCACAACCCATAAACTATTCAACAATAGAGAAGAACCTACTAGTAGTAGAATTTAGGAATCTAGCacaaatataatgtatttgttGAATGCACTGAACTTATAACTGAATGCCAAATTGTGTgtcttaatgttttatatatttatatgattactgtcacacaaaaaacTTCAAAATTGGTAGCATTACAGAATTTGATTGCTGTAATTAtggagcatttttatttgtacacTCTTGCTGAAATTTGAGACAGTGTAAAGAACAATTAGAGTCAAAGATTCaagtgaaaataataaaaataaata
>XM_022679821.1
ACAGCACTTTCACGTTTTCTTTGCTTGGAGTGCAGCATGCCTTACACAGCTCTCTCTACGGCACTGCTGGCTTTAATATGGACTCAGGTTGTCCACTCCAACTTGGACAACCATAAGAATGCAGCCAGGATCCAAATAAAAGCAGaaGACGTATTTAAAAGGTATGATATCAGACAGCCGGGAGAGATGTGGAAGCTGGTGAAGGATCCTCTCAGTTCAGATATCTACGCAGGTGGTCCGAATGGCCTGTATAATTTACATCAAAATGAGTTAAAAATGGTAAAACCTAGCATCTCACTGCTGACTGAAGGAACGAATAGAACGCTGTTCATCTGTGAAAAGATTAAGGAGAAAGATCATAAATGCTGTTTCCTGaaACCGGAATCCGATCAGAATTGCTTTAACGTGGCCCAAGAGGTGCAAATTAATGAAGCTTCCCTGCTTGTTGACAGGACACTATTTTTCACCATGTCCGGTGATCTTAATGCACAAGCCAACTTGGGGCTCTACAAACAAAGCTCCAAAACCAGCTACACTTGGCCACAGGGAACAACAGTGGCacaaaaatatgtgaaaatCATCACAAAAAGCACAACCCTGGATGGCAAGCTGTACTCCTTTCAAACTGTGAAGAATTCGAACCCGGACCCGGAAACGCCTTTATGGATTTCTCAAGTTTCTCACTACTGCATGGGTGATAAAGGGGGAAGTAAAAGCTTGCTGCAGTTCCGCTGGACATCCATGCTGAGCGCTCGTCTGTTCTGtgggaaaaaagagaatagGACGACCTTCACAGAGCTGCTGGACGTTGCAGAATTGGAGATCTCGGGCGACACCAAAATTTTTGCACTCTTCAAGAATGTATATAACATCAGAGCTGTGTGCGTTTATAAAATGTCTGAGATCGAGCGGATCTTCAAGAGCGCCAAGTTCAGTTATCCCAAAGACTCTCACATCTCACAGAATCCTGGAGAGTGTGTTTCAAACAGTCAGTCCTTACATGCAACTGTTCTGAAGTTCATGGAACAGCGTCCGGAGATGGAGGAATGGATTTTGCCTGAGAGCGACCCCCTGGTCTTCCGCCACCACTTGTACTCACACTTACAGGTGGACAATGTCAACAATAAAGATGTCCTGTTAATGACGCTAGAAAATGGCAGGATTCATAAAGTGCTGAAGGAAGAAAATGGTCATTTCATTATCGCTGAATACCTGCCATTCGATAAGAAGACCCACATCCACAGCATGCTTCTGGACAGATCTGAGAAAACGCTGTACGTGAGCAACAGCAGCCAGGTGGTCACGATCAACCTGCGGGACTGCAACCACTATGGGGATGCTTTTAATGCATGTGGTATGGCTAATGATCCTTACTGCAGCTGCAAGAATTCATCTGGAGCCTCGGCTGAAGGTGTGAGAAGGGAAGATCACTTTTTTTCTGCAGACGCAGGAGGACCAAGCATCCAGAGGCTCAGCAGCAGCCCCAGATCCCCAGACCTGATCCCTCGACACTCCAAATACTATCTTACTTGTCCCACACTTTCCAAGCATGCTTCCTACACCTGGATTCATGACAACAAAACTGTATCAGAGTGCGTCTCCACTGAAGAGCAGTGTCTCCTGCTAATAGAAAGCATGAGCAAAAAGGACGAAGGATGGTATGTCTGCCAAGCCACAGAGCAAGAGCAGTCATGGACAGTCACATCTAATCTCTTGGTGGAAAATGGTGCCTCCCACCTGAGAGTGGCTCCTGCAGTGATGACCTGTCTTCTTCTCCTGATCAGTATGATAGTATTCTAGCTGTTTGTTTAGAGTTCATGATGTTGGAGTGTGTGTACCCCTTATTCTTAGTCGTTCACTGCTGATAACAGCACTTTTAAAACAATGGAAGGCTGTTTTTTACCATTGCGCATTAGCTCAGACTGATGAGACTAAAGACCCTATTTTAGCATTCTATAGCCGACCGTCAATGGCTCACCGTGCAGCATATCACTTGCCATTTGTTTTAAGAGCCAGATTtttgtgctctgactttggcaaattggtattttaacggcgcaTTGCTTCTGTGCTTCTTAGCAGAAGAAAAATGACCTGCTCGTGCATCTctacagtgtgaacgagcatgTACTTTTTTTTCGGCTGAAAAGCTCAGAAGcactgcgccgttaaaataccaatctgccaaagtcagagcacatctggctcttaaaagaAATGGCAAGTAAAAAGCTGATTTACAGGAACcataattttagtttatttgataTCCTGTTTATTGCTGACTGtgttgccaaaatagcaatgaacatgTTGTCTGTGGTCTAggtttttcagtcagtggccaCCAACAGTGGTTTCcgttgccaaaatagcaatacaccagaaatgtacctgaacacacctcatttcaggACTACAGCACCCATCAGCAAAGATATATTCGCAATTGCTGTCTCTATTTAAACTGTTGGCGGAGTGTAAGCCTTGCGcatggtgtaagatagggc
>XM_022679822.1
GACAGCACTTTCACGTTTTCTTTGCTTGGAGTGCAGCATGCCTTACACAGCTCTCTCTACGGCACTGCTGGCTTTAATATGGACTCAGGTTGTCCACTCCAACTTGGACAACCATAAGAATGCAGCCAGGATCCAAATAAAAGCAGaaGACGTATTTAAAAGGTATGATATCAGACAGCCGGGAGAGATGTGGAAGCTGGTGAAGGATCCTCTCAGTTCAGATATCTACGCAGGTGGTCCGAATGGCCTGTATAATTTACATCAAAATGAGTTAAAAATGGTAAAACCTAGCATCTCACTGCTGACTGAAGGAACGAATAGAACGCTGTTCATCTGTGAAAAGATTAAGGAGAAAGATCATAAATGCTGTTTCCTGaaACCGGAATCCGATCAGAATTGCTTTAACGTGGCCCAAGAGGTGCAAATTAATGAAGCTTCCCTGCTTGTTGACAGGACACTATTTTTCACCATGTCCGGTGATCTTAATGCACAAGCCAACTTGGGGCTCTACAAACAAAGCTCCAAAACCAGCTACACTTGGCCACAGGGAACAACAGTGGCacaaaaatatgtgaaaatCATCACAAAAAGCACAACCCTGGATGGCAAGCTGTACTCCTTTCAAACTGTGAAGAATTCGAACCCGGACCCGGAAACGCCTTTATGGATTTCTCAAGTTTCTCACTACTGCATGGGTGATAAAGGGGGAAGTAAAAGCTTGCTGCAGTTCCGCTGGACATCCATGCTGAGCGCTCGTCTGTTCTGtgggaaaaaagagaatagGACGACCTTCACAGAGCTGCTGGACGTTGCAGAATTGGAGATCTCGGGCGACACCAAAATTTTTGCACTCTTCAAGAATGTATATAACATCAGAGCTGTGTGCGTTTATAAAATGTCTGAGATCGAGCGGATCTTCAAGAGCGCCAAGTTCAGTTATCCCAAAGACTCTCACATCTCACAGAATCCTGGAGAGTGTGTTTCAAACAGTCAGTCCTTACATGCAACTGTTCTGAAGTTCATGGAACAGCGTCCGGAGATGGAGGAATGGATTTTGCCTGAGAGCGACCCCCTGGTCTTCCGCCACCACTTGTACTCACACTTACAGGTGGACAATGTCAACAATAAAGATGTCCTGTTAATGACGCTAGAAAATGGCAGGATTCATAAAGTGCTGAAGGAAGAAAATGGTCATTTCATTATCGCTGAATACCTGCCATTCGATAAGAAGACCCACATCCACAGCATGCTTCTGGACAGATCTGAGAAAACGCTGTACGTGAGCAACAGCAGCCAGGTGGTCACGATCAACCTGCGGGACTGCAACCACTATGGGGATGCTTTTAATGCATGTGGTATGGCTAATGATCCTTACTGCAGCTGCAAGAATTCATCTGGAGCCTCGGCTGAAGGTGTGAGAAGGGAAGATCACTTTTTTTCTGCAGACGGAGGACCAAGCATCCAGAGGCTCAGCAGCAGCCCCAGATCCCCAGACCTGATCCCTCGACACTCCAAATACTATCTTACTTGTCCCACACTTTCCAAGCATGCTTCCTACACCTGGATTCATGACAACAAAACTGTATCAGAGTGCGTCTCCACTGAAGAGCAGTGTCTCCTGCTAATAGAAAGCATGAGCAAAAAGGACGAAGGATGGTATGTCTGCCAAGCCACAGAGCAAGAGCAGTCATGGACAGTCACATCTAATCTCTTGGTGGAAAATGGTGCCTCCCACCTGAGAGTGGCTCCTGCAGTGATGACCTGTCTTCTTCTCCTGATCAGTATGATAGTATTCTAGCTGTTTGTTTAGAGTTCATGATGTTGGAGTGTGTGTACCCCTTATTCTTAGTCGTTCACTGCTGATAACAGCACTTTTAAAACAATGGAAGGCTGTTTTTTACCATTGCGCATTAGCTCAGACTGATGAGACTAAAGACCCTATTTTAGCATTCTATAGCCGACCGTCAATGGCTCACCGTGCAGCATATCACTTGCCATTTGTTTTAAGAGCCAGATTtttgtgctctgactttggcaaattggtattttaacggcgcaTTGCTTCTGTGCTTCTTAGCAGAAGAAAAATGACCTGCTCGTGCATCTctacagtgtgaacgagcatgTACTTTTTTTTCGGCTGAAAAGCTCAGAAGcactgcgccgttaaaataccaatctgccaaagtcagagcacatctggctcttaaaagaAATGGCAAGTAAAAAGCTGATTTACAGGAACcataattttagtttatttgataTCCTGTTTATTGCTGACTGtgttgccaaaatagcaatgaacatgTTGTCTGTGGTCTAggtttttcagtcagtggccaCCAACAGTGGTTTCcgttgccaaaatagcaatacaccagaaatgtacctgaacacacctcatttcaggACTACAGCACCCATCAGCAAAGATATATTCGCAATTGCTGTCTCTATTTAAACTGTTGGCGGAGTGTAAGCCTTGCGcatggtgtaagatagggc

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05416 Viral myocarditis

RNA

RNA id representative length rna type GC content exon number start site end site
TU218655 True 3338 lncRNA 0.38 1 28886911 28890248
XM_022679821.1 False 2510 mRNA 0.45 13 28889920 28941386
XM_022679822.1 False 2508 mRNA 0.45 13 28889920 28941387

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1 coding downstream 179766 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 262131 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 404691 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 593775 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 685773 28199233 ~ 28201138 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 469776 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 560728 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 662348 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 820281 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 835787 29777174 ~ 29783407 (-)
G161377 NA non-coding downstream 24519 28822717 ~ 28862392 (-)
G161367 NA non-coding downstream 137863 28745699 ~ 28749048 (-)
G161363 NA non-coding downstream 159293 28727183 ~ 28727618 (-)
G161334 NA non-coding downstream 294359 28592165 ~ 28592552 (-)
G161275 NA non-coding downstream 496455 28388563 ~ 28390456 (-)
G161400 NA non-coding upstream 122440 29063827 ~ 29064178 (-)
G161411 NA non-coding upstream 255860 29197247 ~ 29197677 (-)
G161419 NA non-coding upstream 270089 29211476 ~ 29213081 (-)
G161432 NA non-coding upstream 338356 29279743 ~ 29394513 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding upstream 521740 29463127 ~ 29468301 (-)
LOC111194804 NA other downstream 233964 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1307993 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1767658 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2541202 26342351 ~ 26345709 (-)
G160715 NA other downstream 3147549 25738881 ~ 25739362 (-)
G161711 NA other upstream 1374219 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1757783 30699170 ~ 30781708 (-)
tap1 NA other upstream 3710581 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 5156541 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 5459276 34400663 ~ 34731072 (-)

Expression


Co-expression Network