G161377


Basic Information

Item Value
gene id G161377
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28822717 ~ 28862392 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218657
TCAGCACAAACCAGGTTTAACAAGCATTCAATGTGGGTTCTGTCCtgaatttagttttaattataattaatagaagaagaaagaaattaaCCTAACATCAgtaatattgttattaatatatcaataacaacattataacaataacaacaacaaccgTACAAAAATATGTACAAAGCCCAATGTTCAGTTTCCAAATGGAGCAATTGTACAAACTTTAAgcaacaaataaccaaaaacaaaaaagtaaaaataaagataaatgagGTATTCCAATAACCACTTGCATATGCATATCTATAATAAACAGAATCTGAATAAAAGGTAGAGGAGCGCAGGCGGAACTGTCCTGAAACACTTAGCTAAGCACTTGGGAAGATTGTGTCACTCGCTGTTCcacgtttattttttttttattattattaggacgTTCGACAATGCCCATGCAGAGgagctttctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacagacacacactgtcTTAGGACACATTTTAAGGTAGAAAGGCACTTTGGACCATGCTGAACGCGTCAATATGGCTAAACCAATTGGAGACGGCATTTTTGTCCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218657 True 621 lncRNA 0.36 3 28822717 28862392

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1 coding downstream 115572 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 197937 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 340497 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 529581 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 621579 28199233 ~ 28201138 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 548771 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 639723 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 741343 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 899276 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 914782 29777174 ~ 29783407 (-)
G161367 NA non-coding downstream 73669 28745699 ~ 28749048 (-)
G161363 NA non-coding downstream 95099 28727183 ~ 28727618 (-)
G161334 NA non-coding downstream 230165 28592165 ~ 28592552 (-)
G161275 NA non-coding downstream 432261 28388563 ~ 28390456 (-)
G161273 NA non-coding downstream 436051 28385647 ~ 28386666 (-)
G161400 NA non-coding upstream 201435 29063827 ~ 29064178 (-)
G161411 NA non-coding upstream 334855 29197247 ~ 29197677 (-)
G161419 NA non-coding upstream 349084 29211476 ~ 29213081 (-)
G161432 NA non-coding upstream 417351 29279743 ~ 29394513 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding upstream 600735 29463127 ~ 29468301 (-)
LOC111194804 NA other downstream 169770 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1243799 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1703464 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2477008 26342351 ~ 26345709 (-)
G160715 NA other downstream 3083355 25738881 ~ 25739362 (-)
LOC103037190 NA other upstream 24519 28886911 ~ 28941387 (-)
G161711 NA other upstream 1453214 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1836778 30699170 ~ 30781708 (-)
tap1 NA other upstream 3789576 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 5235536 34097928 ~ 34115402 (-)

Expression


Co-expression Network