G161417


Basic Information

Item Value
gene id G161417
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29207963 ~ 29208290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218703
ctgcgcatgcgcgaatatttgcggccgtctgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatatttgcggccgactgcgcatgcgcgaatatttgcggccgtctgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatatttgcggcgactgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218703 True 328 lncRNA 0.60 1 29207963 29208290

Neighbor

gene id symbol gene type direction distance location
LOC111194800 NA coding upstream 7752 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 48778 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 64773 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 144824 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 238568 28954717 ~ 28969395 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 11176 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 162775 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 190122 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 240860 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 268395 29476685 ~ 29486014 (+)
G161414 NA non-coding upstream 5374 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 317719 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 318837 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 321163 28886442 ~ 28886800 (+)
G161302 NA non-coding upstream 443920 28668173 ~ 28764043 (+)
LOC111194801 NA non-coding downstream 1974 29210264 ~ 29214735 (+)
G161425 NA non-coding downstream 124821 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 275224 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 293830 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 412107 29620397 ~ 29639626 (+)
G161331 NA other upstream 91168 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 448956 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 583178 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1411459 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2088699 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1145396 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1646268 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1666748 30875038 ~ 30878327 (+)
efhb NA other downstream 2376456 31584746 ~ 31605490 (+)
G162017 NA other downstream 2860572 32068862 ~ 32148190 (+)

Expression


Co-expression Network