LOC111194801


Basic Information

Item Value
gene id LOC111194801
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29210264 ~ 29214735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218704
AGCTCTCAGGCCTGTTAGGTATTTTAACTACCGTTAGCTAACTGGCTGTTTCAGCTCTCGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCagatttttacatttttaatttgtgtattgacccaaggagtatgggttcctctcaaggtttctatctctctttctgagagAATTTTCTTTGCCACTGTCTCCTTTGTGCTTACTCAAAAGAGgtttggacacttttttttttttttttttttttaactgttcttaattttgtttgtttcttaactttgtcaataaatgtttttttattgctatca
>XR_002651276.1
aaaagctgctgctgattgagaaaaacacacccTGTGCTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacaAGCAGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataat
>XR_002651277.1
tgctgctgattgagaaaaacacacccTGTGCTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacaAGCAGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218704 True 687 lncRNA 0.42 5 29210264 29214735
XR_002651276.1 False 636 lncRNA 0.48 4 29210362 29212876
XR_002651277.1 False 539 lncRNA 0.47 3 29210368 29212876

Neighbor

gene id symbol gene type direction distance location
LOC111194800 NA coding upstream 10053 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 51079 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 67074 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 147125 29018060 ~ 29063139 (+)
LOC103037946 LOC108439022 coding upstream 240869 28954717 ~ 28969395 (+)
csk csk,LOC108264088,LOC106562350 coding downstream 4731 29219466 ~ 29307913 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 156330 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 183677 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 234415 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 261950 29476685 ~ 29486014 (+)
G161417 NA non-coding upstream 1974 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 7675 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 320020 28889370 ~ 28890244 (+)
G161312 NA non-coding upstream 321138 28886972 ~ 28889126 (+)
G161314 NA non-coding upstream 323464 28886442 ~ 28886800 (+)
G161425 NA non-coding downstream 118376 29333111 ~ 29354291 (+)
G161476 NA non-coding downstream 268779 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 287385 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 405662 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 410288 29625023 ~ 29646905 (+)
G161331 NA other upstream 93469 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 451257 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 585479 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1413760 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2091000 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1138951 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1639823 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1660303 30875038 ~ 30878327 (+)
efhb NA other downstream 2370011 31584746 ~ 31605490 (+)
G162017 NA other downstream 2854127 32068862 ~ 32148190 (+)

Expression


Co-expression Network