G161425


Basic Information

Item Value
gene id G161425
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29333111 ~ 29354291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218716
ttgtcacagtttagcccgtgtctgtctcgttgtgtctccctctcctggtctattgtgctcctgcccctctgttttcctgtcatgtgtcccagccatgtgctattgttgtgtttttgtccttgtctccgccctagccctgccctagccattagtgctgtaacctcttgtctcatttgtaaccccgcccccttgttagctcccacaggtgtcccttatgtttgcctgtatataataccccatgtgctccttgttCTGTGTCGTGCTTTGTTTGATCTAGTCCTGTTTCTCTGTCAGAATCttgtttagttgtgtttttgtGCCTTTGAGCCTTTTTGTCTGcagtgttctggtttgttttctttagtttatttatttgtttgattattttgtttgtttgtttaagtctTTTTCTCATATCCTCAtagttcatagtgttttgttttagttaccttttctttatacTATTTCATAGGGTTTtgctcttttgtttattttcttgtttaaatggaaaataaaactaacttgcatttgcatccggccTCCTCCTCTCCGTTACAAAcacatgctggctgagaagcatccaggagaaatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218716 True 593 lncRNA 0.41 2 29333111 29354291

Neighbor

gene id symbol gene type direction distance location
csk csk,LOC108264088,LOC106562350 coding upstream 25198 29219466 ~ 29307913 (+)
LOC111194800 NA coding upstream 132900 29199449 ~ 29200211 (+)
LOC103038575 LOC108439020 coding upstream 173926 29152296 ~ 29159185 (+)
LOC103023184 NA coding upstream 189921 29133628 ~ 29143190 (+)
LOC103022881 LOC108439021 coding upstream 269972 29018060 ~ 29063139 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding downstream 16774 29371065 ~ 29391966 (+)
LOC103039409 NA coding downstream 44121 29398412 ~ 29401581 (+)
LOC103023825 tarsl2,LOC108413626 coding downstream 94859 29449150 ~ 29473681 (+)
tm2d3 tm2d3,LOC108439026 coding downstream 122394 29476685 ~ 29486014 (+)
lrrc49 lrrc49 coding downstream 167486 29521777 ~ 29598907 (+)
LOC111194801 NA non-coding upstream 118376 29210264 ~ 29214735 (+)
LOC111194803 NA non-coding upstream 119447 28652552 ~ 29213664 (+)
G161417 NA non-coding upstream 124821 29207963 ~ 29208290 (+)
G161414 NA non-coding upstream 130522 29202353 ~ 29202589 (+)
G161313 NA non-coding upstream 442867 28889370 ~ 28890244 (+)
G161476 NA non-coding downstream 129223 29483514 ~ 29490820 (+)
G161484 NA non-coding downstream 147829 29502120 ~ 29532246 (+)
G161502 NA non-coding downstream 266106 29620397 ~ 29639626 (+)
G161503 NA non-coding downstream 270732 29625023 ~ 29646905 (+)
G161508 NA non-coding downstream 302399 29656690 ~ 29657488 (+)
G161331 NA other upstream 216316 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 574104 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 708326 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1536607 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2213847 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 999395 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1500267 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1520747 30875038 ~ 30878327 (+)
efhb NA other downstream 2230455 31584746 ~ 31605490 (+)
G162017 NA other downstream 2714571 32068862 ~ 32148190 (+)

Expression


Co-expression Network