G161432


Basic Information

Item Value
gene id G161432
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29279743 ~ 29394513 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218725
CACAATTATAGAAATTACAGACACAAatcataaaaatatgtttattatagatTCAACAGTCATAAAATTAATGAGGTCCGCAAATGACATTAGGCTATAGAGTGGGGGGTTATACAGCGCAGATTAGGAATAACCACAAggaagggaagaaaaaaaacaaaaagcagtttttcttattttgggGTTTTTTGATAAAGTTTGATAAGGTCACACTCTCAGATTACATGATTCAtattagtttaaaaatgaagaagagaacaaataaataaaaaagacacttTTGTCCACCCCTCCCCACTTCTTATATTGCTTTATTTTCAAGACTCGTGCCTGAAGACACACATGTTCTGACGTCAGCTCTTGGCAAAGCTCCATGGcacagaaaaattaaaaacagcaatGACGTAAACTCACGTTTCAACCAACTGTCACAACACATGACTCACACGAACCACACGgcttggaaaaaaagaaagttggCTGTATAATCTTTCGTTTTTTTACCAAAAACGAAAATATCTTCATCTGCTCTATtccagaccacacacacacgatcCACTTAGTCTGAAGAACTAAGCTGTTTAAACACAACGTAATCTAATGGGTTCTTGTGTAAATGAGAACATCAATCTTTAGGGAGAACAGTCAGAGAGAATGTTGACACTTTATAGCTGTTAGACAACACAGAACCACCTGCACAAAACAGCACCACTGGTGATGGACTTGAGGCTCAATAGGGGCCGATGAGGGGGTCTCAAATGACGGGGGTCAAAGGCAGAAGGCAGTTTGAATGGTATGAGGATTCAGGCTTCAACATAAACTGACCCAGGTCCCTTTCTTATAGGCCTATTTTACAAAACCCCCATGTGAGTGGGTGGTGGGCGGTATCTCCAGATAGACTAATGAAAGGCCCACCATATTTGCATCCTGTTGCCTGGAGAATTAACCTACAATATATTATTGCTTTAACAAACCACCAGCCTCTGGACATTAAAGACCTTTAGGATTCCCAGATACAGCTTATCAAATTTTACCATTAAAGGAACATGTCAGCATTTTACAACCCAATCTCTTTAGGCCGCAGCTGAGTGTATGATCAAGTCTATTGATTCAAAATGCCAAAATGACTTTTGTGTAATCTCAGAGAATCTAAAGactaaacactgcactgacctgcaggatatgtgGATGAATGTGGACGAAAATTCTGctagagttgcttgtctgtccTCATGGACAACTCTAACCAGACACCACCGGTCAGCATCATTATCACTCATTGCACtgttctgtccactgtggggagtaatgccttctatgacatgtTCCTGGGATACACGTGATGCTGTGGCACCCATTTTGGCACCCAATAACAGGTCTCGCTCCAACTGTCATAATTTACatagccttgccatgagcacaacGGTCAGTGTTCAGCTTCAtgcacaagataacacctcacaacttacatacAGGTGTAGTAATTCCCAGGCAATCCACTGAAATGGTAAAACCTAATGAACACATACTAATTACATACTGTACagtactgctgtcccatgaattttggcatgtcagtgtatatggATATACAAATTGAATTGTACAGGTGTTTGTTAAACTcttatacagtaatacagtagaGAAAGTAGTTCCGGCTCAGGTTTTTTAGGAATTTGAAGGTATTTCTAGGtatttctgaaaaaataaattaaaacagatttctctTTCTGAGAAACTAGTTCCACTTCTAACTATAAATGGTTgatttacattaatatataatttatcatttaatttCTATAATTCAGTGAATTTTGAGTCAGCAAACCTAACAAACCTATGGTTTATTGTAATCTATGATACATCACAGATTCTACTGTACAGAGTAGTCTATTaaagcaggattttttttttttaagtatggcCTATTCCTTtaaaagtgcagtgttttccaggACTGGGTCTACAAATATGCACTAGctgtattgttgttttgctgcttttttaCATGGCTCTACATATGGCTCTTTCCCAGTGTTCCTGACCGTCATTCACCTTTCCCAGCAACATATCCTGCTCTAAAATCCCATATATAGTGCACTCTTGAAACGACCCTATCTCATAGGGCACTGGAGAAACAGTAGGCAGGGTGGTTTCATGATGGaccctttaaaaataaataaaaaggaagcCATAAAGTTGATATTCACAAACCGGAGAACAAACAGCAATGACGTTAAAAACTGTCAGCACAACACTTTTAGCTTTTACACACAGATGAGGCTCTAGAGGGCACTGGGATGTATGAGAGTTGATATGTTGTAGCTGTAGAGAAACTGtccatgtgtgtatgtgctttCAGGGGAGGGATTATTCAAGGCCTTGGCATCAGACCTGGCAGCAAGTACGCTCGGCAGTATCTTTAAGTGTATTTGTGCTTGTATTGCATTAAAGAGAtagacatgtgtgtgtgtgtgtgtgtgtgtgtgtATGTGTGTGCATGTCaggaattgtgtgtgtgtgtgtgtgtgtgtgcgtgtttgaaTATTAAGAAAGTGAGCATCCTCCCAGCTCTTCACTCTTGTCCCGCTCGGTCTGATGTTGTCGGACATGTTTATTTAGACCCATTATGGATGTAGACAGCAAATAAGCAAACAGACAAATCAACAACAACCAAAAAAGAcgactgttaaaaaaaatgataaaaaagagaataaaaacaaacaaaaacaaacaaacaaacaaaacaaaacaaaaaatcagtgtGGCAGCGGAAGGGAAACGAGACGCATCAGCCCTGCCATCTGGAGGCACTTTGGCACAGAGCGaacgcctctctctctctctcacacacacacactcttacatacACTCACTCACAGGATAAGCATGTAGCTAGAACCTAGAACCCGTGCCACACAACACAAGAGAAATCTGAGGTACAGACAGAAGCcacagtgagacagagagaaaatgcTTGAgtaagagcaaaagagagagtgtgaaagagaatgagagggtGTGAGAGACAGAATGCAAGAGAAAATAATGACAGTAGAGGGAAAAGCGCAAAAAAGTGAGATACAACGAGAGACAAAAGCTTCGTCCACACAGCAGGAATATCATCATGTGTGGCACAGAtctgtgtggcagtgtgaacagcataaacacactgaaactGAATTCCAGTCAGAGCCACTTTTATATTACACGGCACCAAAATGCGACTCGGACTAAACAGCCAGAGCTGAAGTcagttaatatttttacatcaaggagaaaagaaaatagatgTCAGCAATGAGTGAGGGGTTCAGTGTTGGGATAATGACCTCAAAACTGGTAACAGTCCTGGGTGTAGTCTTACTTAATTAGAAGACTTAGGGAATTAGGATCGCAACCACTGTATGttcctaataaaatggccatttCCTTTAACCTTAATGTGTCCTTTTTACAGCAAGCCCTTCTATTACTTACTGGAACTCAAACTATGGTATTTGATAGCGCTTAAGTGATGCTGGaaaagatgaaactgaaactttacaCGAAGCATTTCTTCTTTTGCGATTTGGTgagaaaaatcagatttgggccactttaacctgctgtgtgaatgtagcctgAGAGTTTGAGAGAGCGTGTATGTGCAAAAaagagtaagagacagagagatagggaagagaaggaaggagaaagagagagagagacagagagagagagagaaagctagcATGTCACTGAGACAGATAAAGAAAAGCACCTGACACAACAACGGAGAAAAGGCCAGCCTTCCTCCCATTAatgtcatgctgaaaaaaaaaaacgagtgagagaaaaggaaagacaaGAGTGAAAGGGAAGGAGAGTGTGTGggaggaaggagagagacaggaaggggggagagagggagggactgtgtgtgtaagagagagagagagagagagagaacACTATGATATTGGCATGgaaaaatgacaaacaaaaaaaaggctgaAGAAACAGATATCATCAGGACGCtttaacacacacccacacacattcattctctcttacacactctctctctcacacacacacacacacacacacaaaaggagGTCTAGTAAGGTCCTCCTCTGTCTACAGAAACACATCGCGAGTGCGTCCAGATCAACAGTCCAATAAAAGTCCGAAAGAGAACGAAAGCAAAAACCCAGAGCCTCTTCTCAAGCTTCGCTGCTCGTTGGTGACGGACACATCCTGGACCTTTCTGGACGTTCTGCTTCCAGGAggccgccgccgctgctgctccACCCGACTCCTAACCTCCCTACTACAACCTCTCCTCCTGGGTGAAGCCCCCTCCCTGGCGCTGGGCTCACAGATAGAGTTCTTTAGCTCTGATGTGCTGCAGCTTCTCGCGCAGCATCCGGAACGATGGCCTCATCACGGAGTCCAGGGTCCAACACTGCTTCATCAGGTCGTACACCACGGCCGGGCAGCCGTCCGGCGCGTCCATCTTATAGCCCTTCTCCACCCGCGGCACCA
>TU218727
ATTTATTCGTAATCATGGTagtataataaaacaatgaacaTTGAAAGCACTGACAAGTTAACCcaaggcctctctctctctctctctctcgcgcactCTCTCACTCGAGCATTGCATGCAGTACCGCCCTTCCCCCCGATTGCTCCACGTCCAAGTACTTCAGTTAAGTAAATCTCCTTTGTGTTCTTCtcattgtatgtttttttttttttttttttttttttttttttttttttt
>TU218728
ATTTATTCGTAATCATGGTagtataataaaacaatgaacaTTGAAAGCACTGACAAGTTAACCcaaggcctctctctctctctctctctcgcgcactCTCTCACTCGAGCATTGCATGCAGTACCGCCCTTCCCCCCGATTGCTCCACGTCCAAGTACTTCAGTTAAGTAAATCTCCTTTGTGTTCTTCtcattgtatgtttttttttttttttcttcttttcttgtttttttttgtttagtttttttggagtccttaaaatatattttaatataaaacaagcTCACGCACAAGagtccatccatccctccagaAGGGTCAGCGGGCAAAACATGTTCGATTTTGGCTGGCGAGGTTGAGCCCGGCTGGGAAGTGCTCACATAGACGTAGATGTGTGTGCATGTCaggaattgtgtgtgtgtgtgtgtGTGTGTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218725 True 4533 lncRNA 0.42 3 29305994 29394513
TU218727 False 237 lncRNA 0.37 2 29293532 29308445
TU218728 False 438 lncRNA 0.42 2 29279743 29308445

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1 coding downstream 572598 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 654963 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 797523 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 986607 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 1078605 28199233 ~ 28201138 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 16650 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 107602 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 209222 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 367155 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 382661 29777174 ~ 29783407 (-)
G161419 NA non-coding downstream 66662 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 82066 29197247 ~ 29197677 (-)
G161400 NA non-coding downstream 215565 29063827 ~ 29064178 (-)
G161377 NA non-coding downstream 417351 28822717 ~ 28862392 (-)
G161367 NA non-coding downstream 530695 28745699 ~ 28749048 (-)
G161473 tarsl2,LOC108413626,LOC103138046,LOC106921578 non-coding upstream 68614 29463127 ~ 29468301 (-)
G161547 NA non-coding upstream 104610 29499123 ~ 29499327 (-)
LOC111194805 NA non-coding upstream 226546 29621059 ~ 29625291 (-)
G161588 NA non-coding upstream 419089 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 580841 29975354 ~ 29983682 (-)
LOC103037190 NA other downstream 338356 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 626796 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1700825 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2160490 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2934034 26342351 ~ 26345709 (-)
G161711 NA other upstream 921093 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1304657 30699170 ~ 30781708 (-)
tap1 NA other upstream 3257455 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4703415 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 5006150 34400663 ~ 34731072 (-)

Expression


Co-expression Network