G161473 (tarsl2,LOC108413626,LOC103138046,LOC106921578)


Basic Information

Item Value
gene id G161473
gene name tarsl2,LOC108413626,LOC103138046,LOC106921578
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29463127 ~ 29468301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218775
TTTATGGTCCTCTGTTACCTACAATTCTCTTACTGGCGTATTCTTCAAGGGATGGATTAACAGGCACTAACATCACCTGACGTGGGGATAACCACAGtggccATTTTCCTGCATAGTTTTCTGTAAGAATGGCAATCATCCTCTCTACTGAGCCCAGAATAGCACGATGGATAATAACCGGCCTGGCTTTGTCATCTCCATCTTTCCCCACATATGTCAAGTCAAATCGAATAGGCAGCTGGAAGTCCAGCTGAATGGTGGCACATTGGTGATAGCGCCCGATGGCATCTTTAATATTGATGTCAATCTTTGGCCCATAAAAT

Function

symbol description
tarsl2 Enables threonine-tRNA ligase activity. Involved in threonyl-tRNA aminoacylation. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and urinary system. Orthologous to human TARS3 (threonyl-tRNA synthetase 3).

NR:

description
PREDICTED: threonine--tRNA ligase, cytoplasmic-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218775 True 323 lncRNA 0.45 5 29463127 29468301

Neighbor

gene id symbol gene type direction distance location
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 16166 29411163 ~ 29446961 (-)
p2ry1 p2ry1 coding downstream 755982 28703879 ~ 28707145 (-)
rap2b rap2b,LOC107757383 coding downstream 838347 28622083 ~ 28624780 (-)
arhgef26 arhgef26,LOC106581462 coding downstream 980907 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 1169991 28292230 ~ 28293136 (-)
larp6 larp6,LOC103354325 coding upstream 33814 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 135434 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 293367 29761668 ~ 29765504 (-)
LOC111194844 NA coding upstream 308873 29777174 ~ 29783407 (-)
LOC111194845 NA coding upstream 348730 29817031 ~ 29818532 (-)
G161432 NA non-coding downstream 68614 29279743 ~ 29394513 (-)
G161419 NA non-coding downstream 250046 29211476 ~ 29213081 (-)
G161411 NA non-coding downstream 265450 29197247 ~ 29197677 (-)
G161400 NA non-coding downstream 398949 29063827 ~ 29064178 (-)
G161377 NA non-coding downstream 600735 28822717 ~ 28862392 (-)
G161547 NA non-coding upstream 30822 29499123 ~ 29499327 (-)
LOC111194805 NA non-coding upstream 152758 29621059 ~ 29625291 (-)
G161588 NA non-coding upstream 345301 29813602 ~ 29816599 (-)
G161642 LOC107704271,LOC107712751,LOC107588547,LOC107746947 non-coding upstream 507053 29975354 ~ 29983682 (-)
G161645 NA non-coding upstream 531445 29999746 ~ 30000998 (-)
LOC103037190 NA other downstream 521740 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 810180 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1884209 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 2343874 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 3117418 26342351 ~ 26345709 (-)
G161711 NA other upstream 847305 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 1230869 30699170 ~ 30781708 (-)
tap1 NA other upstream 3183667 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 4629627 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 4932362 34400663 ~ 34731072 (-)

Expression


Co-expression Network