G161502


Basic Information

Item Value
gene id G161502
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29620397 ~ 29639626 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218809
cctcaaacttaaaaaataaataaataaataaataaacacacccttaaaaacaaatagaaataaataaaatggtgcccttttttgataaaacttacaaagtagacaatagaaaacaagtacaatttatATGCTCTTAAGTAAATAGTTTTCCCTATTGGGCTagaattgcaaaacaaagcttttaaataagtgcCAGTGTTCTATAAAATGAGATCTTTTCTCATGAATATGCAAAACATCTTAACTTGTAGTGCATACAAAACCTGGTACACGGTTGGAAGATGTGCCAGGGACAGTTCCTTGTTTAACGTTGAATGGTGaactggtgctgctgctgcgttcATTCCTATGGTAGCAGCACTTCTCCCACTCCGCTACATGGTTCTGTTTAAGGTATAGTGATAAATTGGTTCACCTTACAGCGAGGACCTGTTTGGTCTACGTCCGACGCCGCAAAACCGAACCAACTCCAGATCACTCCAGATCATCCGCCGTCAtgtgttttgtgtatgtgtgtgtgtgtTAGTGTGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218809 True 534 lncRNA 0.38 2 29620397 29639626

Neighbor

gene id symbol gene type direction distance location
lrrc49 lrrc49 coding upstream 21490 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 134383 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 146716 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 218816 29398412 ~ 29401581 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding upstream 228431 29371065 ~ 29391966 (+)
LOC111194806 NA coding downstream 89724 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 101435 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 236148 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 250267 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 261690 29901316 ~ 30027748 (+)
G161484 NA non-coding upstream 88151 29502120 ~ 29532246 (+)
G161476 NA non-coding upstream 129577 29483514 ~ 29490820 (+)
G161425 NA non-coding upstream 266106 29333111 ~ 29354291 (+)
LOC111194801 NA non-coding upstream 405662 29210264 ~ 29214735 (+)
G161417 NA non-coding upstream 412107 29207963 ~ 29208290 (+)
G161508 NA non-coding downstream 17064 29656690 ~ 29657488 (+)
G161511 NA non-coding downstream 84268 29723894 ~ 29724121 (+)
G161532 NA non-coding downstream 173995 29813621 ~ 29816600 (+)
LOC111194812 NA non-coding downstream 231284 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 325675 29965301 ~ 30033221 (+)
G161331 NA other upstream 503602 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 861390 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 995612 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1823893 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2501133 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 714060 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1214932 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1235412 30875038 ~ 30878327 (+)
efhb NA other downstream 1945120 31584746 ~ 31605490 (+)
G162017 NA other downstream 2429236 32068862 ~ 32148190 (+)

Expression


Co-expression Network