G161508


Basic Information

Item Value
gene id G161508
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29656690 ~ 29657488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218816
aaacTTAAAGAAGGTCCACAActgaaattgatcaaatttattaccatgcaatttattaaacaaattgatAAATTatgaaccaaacagaattggaaaaaagtggcttacattaactaatattcacattaataaatcaataaaccaggaGACAatacttactcctgttactggcactcactcctgttactggcactcactcctgttactggcactcactcctgttactggaactcactcctgtcactggaactcactcctgtcactggaactcactcctgtcactggcactcactcctgttactggcactcactcctgttaactggaactctttcctgttactggcactcacttcttgttactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218816 True 362 lncRNA 0.40 2 29656690 29657488

Neighbor

gene id symbol gene type direction distance location
lrrc49 lrrc49 coding upstream 57783 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 170676 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 183009 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 255109 29398412 ~ 29401581 (+)
LOC103039106 cplx3b,cplx3,cplx3a,LOC108439029,LOC103033419,LOC108264002,LOC107753702,LOC107665490 coding upstream 264724 29371065 ~ 29391966 (+)
LOC111194806 NA coding downstream 71862 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 83573 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 218286 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 232405 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 243828 29901316 ~ 30027748 (+)
G161503 NA non-coding upstream 9785 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 17064 29620397 ~ 29639626 (+)
G161484 NA non-coding upstream 124444 29502120 ~ 29532246 (+)
G161476 NA non-coding upstream 165870 29483514 ~ 29490820 (+)
G161425 NA non-coding upstream 302399 29333111 ~ 29354291 (+)
G161511 NA non-coding downstream 66406 29723894 ~ 29724121 (+)
G161532 NA non-coding downstream 156133 29813621 ~ 29816600 (+)
LOC111194812 NA non-coding downstream 213422 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 307813 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 373435 30030923 ~ 30033401 (+)
G161331 NA other upstream 539895 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 897683 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1031905 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1860186 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2537426 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 696198 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1197070 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1217550 30875038 ~ 30878327 (+)
efhb NA other downstream 1927258 31584746 ~ 31605490 (+)
G162017 NA other downstream 2411374 32068862 ~ 32148190 (+)

Expression


Co-expression Network