G161511


Basic Information

Item Value
gene id G161511
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29723894 ~ 29724121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218822
tccacagtgagaaaagctcCATTCCGTCCCAGAATGGGGCTTTTATTGAATGAACAGCAGATATAAACTAGAATTACTGATACCCAATATTAGTCCACGGATTTACTGAGGAATATTCATAGTTTGTCTATATAACAAGCATTTAGAAACtctgtaatgataataataaatgtgtaatataaattatagttatatctatacattataattctcaTAGTCTATCTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218822 True 228 lncRNA 0.30 1 29723894 29724121

Neighbor

gene id symbol gene type direction distance location
thsd4 thsd4 coding upstream 8292 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 124987 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 237880 29476685 ~ 29486014 (+)
LOC103023825 tarsl2,LOC108413626 coding upstream 250213 29449150 ~ 29473681 (+)
LOC103039409 NA coding upstream 322313 29398412 ~ 29401581 (+)
LOC111194806 NA coding downstream 5229 29729350 ~ 29734672 (+)
LOC111194842 NA coding downstream 16940 29741061 ~ 29743027 (+)
LOC107196975 NA coding downstream 151653 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 165772 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 177195 29901316 ~ 30027748 (+)
G161508 NA non-coding upstream 66406 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 76989 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 84268 29620397 ~ 29639626 (+)
G161484 NA non-coding upstream 191648 29502120 ~ 29532246 (+)
G161476 NA non-coding upstream 233074 29483514 ~ 29490820 (+)
G161532 NA non-coding downstream 89500 29813621 ~ 29816600 (+)
LOC111194812 NA non-coding downstream 146789 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 241180 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 306802 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 343895 30068016 ~ 30127142 (+)
G161331 NA other upstream 607099 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 964887 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1099109 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 1927390 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2604630 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 629565 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1130437 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1150917 30875038 ~ 30878327 (+)
efhb NA other downstream 1860625 31584746 ~ 31605490 (+)
G162017 NA other downstream 2344741 32068862 ~ 32148190 (+)

Expression


Co-expression Network