G161532


Basic Information

Item Value
gene id G161532
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29813621 ~ 29816600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218854
gaagacgaggaggcggacgcaattgCAAACAAAAGGGGATTTATTACagacaacaaatacaaaataaacatggaataaactgaaaacaaagctgaggaaactggggaacacatggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacaacTCCCGGGGCGCGAAAAACGAAACCCCAGGAGCAGGTCAGGAGAGGgcggaaaacaaagaacaagacaagacagaactAGGACGGAGaccggacagggaactggacaggagaccgGACAAGAAACGGGGGCAGGACCGGGAACGGACACTGGACGTGGGGCTGGGCAGGGAACGGAAACTGGACagtagactggacaggagacagggaCGGACACtggaacagggactggacaggggacacaaagggagacggagactggacaggtgacagagactggacataaGGCTGTACTGGGGACTGGACACTGGACAGGACAGGAGACTGGGGCATGACACTGGACACAGACTGAAACTGGGACTGAACTGGGGATgtaaacggagactggacgaaagactggacagaGGACAGAGacgtagactggacaggggtctGGACATTGGACAGGACAGGGGACACCAATGGGGACTGGACCGGAGATTGAACAGGAGACACGAATGGGAGCTTAGACTGGACAGAACTGGACGGGGGAACAGGGACAAACACATTGACAGGGACAGACACGAGCACTGTGacggggacaggaacagaaaaaccacaggggacaggaacaggaacgaACACAGATAtagggaccaggacagggagagacaggggaacaaaaaacataggtgggtgcccaggaccggcaaaagtctgtggggatagcctgggcacataactgggggcaaagtcaggaggcctaggagcaggcctggaaatacggggcctgggcccaaacatagttctgggagctgcaggtgcttgggctggagccggagcagctggaactgctggtgcttgaactggagccggagcagctggaactgctggtgcttgagctggagccggaacagctggaactgctggtgcttgagctggagctggagcagctgggactgctggtgcttg
>TU218855
gaagacgaggaggcggacgcaattgCAAACAAAAGGGGATTTATTACagacaacaaatacaaaataaacatggaataaactgaaaacaaagctgaggaaactggggaacacatggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacaat
>TU218858
gaagacgaggaggcggacgcaattgCAAACAAAAGGGGATTTATTACagacaacaaatacaaaataaacatggaataaactgaaaacaaagctgaggaaactggggaacacatggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacaat
>TU218859
gaagacgaggaggcggacgcaattgCAAACAAAAGGGGATTTATTACagacaacaaatacaaaataaacatggaataaactgaaaacaaagctgaggaaactggggaacacatggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacaat

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218854 True 1274 lncRNA 0.55 2 29813621 29814942
TU218855 False 342 lncRNA 0.48 2 29813621 29816600
TU218858 False 342 lncRNA 0.48 2 29813621 29816600
TU218859 False 342 lncRNA 0.48 2 29813621 29816600

Neighbor

gene id symbol gene type direction distance location
LOC111194842 NA coding upstream 70594 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 78949 29729350 ~ 29734672 (+)
thsd4 thsd4 coding upstream 98019 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 214714 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 327607 29476685 ~ 29486014 (+)
LOC107196975 NA coding downstream 59174 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 73293 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 84716 29901316 ~ 30027748 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 219811 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 273699 30090299 ~ 30102977 (+)
G161511 NA non-coding upstream 89500 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 156133 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 166716 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 173995 29620397 ~ 29639626 (+)
G161484 NA non-coding upstream 281375 29502120 ~ 29532246 (+)
LOC111194812 NA non-coding downstream 54310 29870910 ~ 29874312 (+)
G161599 NA non-coding downstream 148701 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 214323 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 251416 30068016 ~ 30127142 (+)
G161620 NA non-coding downstream 324115 30140715 ~ 30140944 (+)
G161331 NA other upstream 696826 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1054614 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1188836 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2017117 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2694357 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 537086 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1037958 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1058438 30875038 ~ 30878327 (+)
efhb NA other downstream 1768146 31584746 ~ 31605490 (+)
G162017 NA other downstream 2252262 32068862 ~ 32148190 (+)

Expression


Co-expression Network