G161599


Basic Information

Item Value
gene id G161599
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29965301 ~ 30033221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218957
TTAATATTGACAGACTGATAacaacaggtgtgtgtgtgtgtgtgtgtgtcagtgctcTGTGTGTGATTAGATGAGCTGGTTTGTGTTGAGCTCAGCATGAGAACTGAGAATAGATGATTTCCAACTGAGATACAGCCTgtgtatgtacacacacacacacacacacatcaacacacacacacacacacacacacacataaacacacacacaggtacgcACACACACCCCTCTGATGTTGTTCGTCAGACACTGGAATATTAGAAGGAAGTGCTGCAATGGCTCGTGATTCTTCATCTCACTGATAGGAATGTACCATATCGGAGGGGGGAAAAGGGCCGGGGGGGTCACGAAGGGTCACAGTCATTTCTTCCAGTTGGGTTGGTCACGAATTCGTTTTTCAGAACGTACCATGTCTCACTGCAAAGCTATTTATATAAGAGTATGTATTGTGctagattttatttattgctttaacTCATTCTCGCTTCAGATCCTTTCCTCAGAAGTCGTACACTGACTCGCGTGGATGTCCGTTCGCGTATCCGGGTCGATCCACTCTGGAATGGTCAGGaaagtttaaatgaaaaaaaaaaagtatgtaaactcTAGTCCTCTATTTACAGTACGTCCATATCAGATAAATAACGTAGAGTAAATTTTAAAAGAGACGCTACTCAGTCTGCTaatgatgtaggtgtttttgtttttcgttTGTAGGCCGTGTGGACAGTGGCTTTTAGTTTTTAACGTATGTAGGTAGCTGTAGTCTCACGTGACTCTCGCCCGTCAGTGGTGTTGCGCGTATCCGCACTGTTCCGGAGTCGAGAGCCTCCGCTCCTCAGCACTCGTCACTCATCCCTCATGTCGCTCCATCTGATAAAGCTCAATACGAACACGGGGAAGTGTTGTGAGAGTGGTTTCCAAACAGATGACTTCTGTTGATGATCTTCCAAAGCTTTACTGAAATTAGCTCGAATGATGACTGAGCTCTGTAGGGTTCTAGAGCCGTGCCTCCCAGTCCAGTCTTCAGGAATCAACACacactttaaaggagaactccggtgtgaaattgactGTGGATGTGGTAAAACTTGATAAACAGTAATAACCTTTCTTGAATAGCCTGCCTCTGCTCTCTCGCAGCTTTCCGAGagttttaatggggcatattcttgcccctgcagataaatcgatTTTTACAGCATTATCCACcttttaaagtagctccacacctcattggtagaatccagaaagacctgaaatttaaaataaagcattaagaattttaaaagtgcacaagaagtgtATTAATAACCACTGTTTACAAACCTGCAGCTTTAGCTACATCTCCTGGCACTGCTATCTTAAAGTAAAGCCATGTCTTCTTTATGTGTACAGCGTGTACTACCATCACCATTACGTGCTCGTGACTCtactgatcatgactttactttaaaattaatgcCTGGAGATGtacAAACCCAAACCTTTAGTTAAAACCACAAATATATGTGTGGCTTCTATGAAATGAAATGTCTAGAGCAGTGGTCTTTATACTGGTTCTCAAGTACCCCAATGAAATCCACATTTTGGTTTAATACTTTGCATTGTGATGGTTGGACCTAATTGAGAACCATTGATCTAGTCTCTGAGAAGCAATGGTGCCACTCAAGTCTCCAGAATGATGCTCTTGAACCCTATAGAACTCTCGAGAACTCTTGAGGTTCTCTTTAAATTTCACTTTGTCTCGTTTAGCTCATCAGTTCATTGTAAAGCGAAGTGGCAGAATCCGAGAGCGTACGTTCCTCAGGCCGGAGTCACAACCCTTGTGAACCCATGCACCACTGACCTGGTGAACCCCAGGTGTGAGCGGAGGCTCTGTCTCTGTCCGCAGCCTCCAGACAGTTCCTCAGTATTAGTGAACACAGCAGCACATTCTGTTAAATATGAAATGGGCAGGGCTGTTTTGTTtactcttttgtttgtttgtttgtttgtttgtttgtttgtttgtttatttgaatgtGCCGCCAGGCAGCTTTGTATTCAATGCTGTCTGCTTGAAACTGACCAGTGACCAAGAACTCCGATTCTCcttgcacacaaacacacacacacacacatatatatatatatatatatacacacacatatatacacagtagTATGGAAAACTCACCACCTTTATACATTTAATTGAAAATCAGTATAAAAAAAGATGGTTTAATTTCTATTGTTTAGTACATTTATTGTTTCAAGAACCTCCAGATAACACATAATGTAAATGTTCCAGGTAGAACCTTTACATTTGTACAAAATGAAGGTTCtttcaacttaaaaaaaaaataaggaaccCAATAAAAGCACCTCAAAAAGTGAATCCCACCTAATCCCAACTCATaccctgcattcacactggcaggcaaccattcatttcctatgtaTGGAAGCGATTTGTAGCCGTAATTCAGCAAGAGGCAACACAACAACAATTATACGATTATTAATACGAGATtatttggaccaatcacagacgCAGGGGTCCGATAATCATCCAATAATCATCATAAAccaattattctgttttatacaATGTATCTTTGCTCAAATACAGGGATTAATACTTTTGGAGAAAGATGATGTAGAGTGAATGAAAGTAGCGGATGGCTCAATAGCTAGCTTAGTGGATTAGCGTCCATGCTAACCcattatacatacacacacacacacacacacaaacaagacGAACTTGGGTCATCGCCTGCCAGTGTGAAAATGCGGGGTAAGAGTGGTCACTGAGATCTGAAAAGTTCTTAAAAAGAGTGCATCCTAATATAGTGCTTTTCCATCGACGTGAAACCGGCTCTGTTCTGTTTTGCAAACCTAATTTAGAAGTGTTTGCAGTGTTTCCACCAACATATGTAGGTTCAAGAACCAGGAACTGAAGAGAGCTAGGTTCTTCAGCACGAACTGTGACCCCTTCTGTTCACCACCGCTGTGGagcgccctctgttgatgacatATGATGTAGCGTTTTGaaggttccactaaaactggtggaaattgACCGCAGTTCTTATAAGCCTGAATGGAACTGGTTCAAAAACCAAAGTTCTCTTGGTGGAAAAGAACTTCATTAATCTGTcactcaaaacattttttattattattattcttacaAAGAACCTCCATATAAAAGGTCTATTCAAATGTGATtggacaaaatataaaaaaagaactaaattatgtcaaaaaaaatcaaaaatgccATTTTTGTTACagacacataaatatatacacaaacagacaaacacacacattgggGACCTTACTTGGGgaaacgtttttatttattttttgtccgCATTGCTCGTCTACAGGTCTATATCATCAAATGCCTTATTCATAGTTCAGGACTACTTTACAGGACTTTTATTGTGTAACGCCCGCTCCTGCATACACACACCCCCTCCCACTGTACCAGCAGCTCAGTTCATCAGCCGTCATCTCCTCCTGTCTACacatttgcttgtttgtttgtttattttgtcatAATTTTGGGACCATTTGTGCGTGTTTGTTTGTTCTCTCAAAGATTTTACAGGATTTTACTGgaataaaaattatgtttaagaaaaaaataacaacaactgAATGTTAAAAAGTATTGCTGTtcatgaatattttatttttgattgtttttttcgttcgttttggtttgtttacctGGATGAAGCCTTACCTTGGAATGGAAGTCAGTGAGTGAGCGAGTCGGGTGATGTACGGATGACTCTggtgtttaattaattaatttattctcGGTCCCCTAACGTGGAGCAGTGATGCATCGTCGTCGTAGTTCAGTCTGTCTCTTATGCACTTTTtctgagggggaaaaaaaaaatttaaatcaaaaataaataccATTCACTTGTATTCACTGTAGAAACCATTCAGGCTGTTAGCATTGGCTGTGCTAGGCTAACTATGGTAAATGCTAATGGCTTTAAGAACAAACTCTCCAATTCTCTCATCCATTGTGCTATTCTCGTATTATCCACACGATCATATCAAACTACACTATGATGTTGGTGTAAATCCCCAAAGACCACCCATATCACCCCCAGATTGCACTAATCCATCATTCTAGATTAGGAATAAAGGTTGCAGTACGCAGTTTGTAAACGTACCAGTttgataaatgaataaattggaTCTACATTCTCATGGTTCTGATGGAAGATCCCACAGTTTGGCTCCATCATCCCACAGCTGTATAAAGTCCACCACTCATGCCTGTATAAAAGCGTAGCATTTGGGAACATCTATTAGCCTTGTTAGCTGTGGCAGAACCGCTAATCTGCTAATCATCCCGTACATATGATAGATAAGTTTTGTTTTGATCTaatgtgataatttttttttatttgttttgttttggggggggggggcagacaGCCATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218957 True 4465 lncRNA 0.40 5 29965301 30033221

Neighbor

gene id symbol gene type direction distance location
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 66872 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 80695 29875774 ~ 29884606 (+)
LOC111194842 NA coding upstream 222274 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 230629 29729350 ~ 29734672 (+)
thsd4 thsd4 coding upstream 249699 29606057 ~ 29715602 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 3190 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 57078 30090299 ~ 30102977 (+)
lysmd2 lysmd2 coding downstream 398226 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 628661 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 764917 30798138 ~ 30800224 (+)
LOC111194812 NA non-coding upstream 90989 29870910 ~ 29874312 (+)
G161532 NA non-coding upstream 148701 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 241180 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 307813 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 318396 29625023 ~ 29646905 (+)
G161612 NA non-coding downstream 34795 30068016 ~ 30127142 (+)
G161620 NA non-coding downstream 107494 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 128883 30162104 ~ 30213901 (+)
G161677 NA non-coding downstream 183281 30216502 ~ 30216804 (+)
G161682 NA non-coding downstream 218361 30251582 ~ 30252005 (+)
G161331 NA other upstream 848506 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1206294 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1340516 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2168797 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2846037 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 320465 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 821337 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 841817 30875038 ~ 30878327 (+)
efhb NA other downstream 1551525 31584746 ~ 31605490 (+)
G162017 NA other downstream 2035641 32068862 ~ 32148190 (+)

Expression


Co-expression Network