G161612


Basic Information

Item Value
gene id G161612
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30068016 ~ 30127142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU218973
cctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttagtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaacccataatgttgtgtgcattgcaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218973 True 253 lncRNA 0.45 2 30068016 30127142

Neighbor

gene id symbol gene type direction distance location
myo5a myo5a coding upstream 40268 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 169587 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 183410 29875774 ~ 29884606 (+)
LOC111194842 NA coding upstream 324989 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 333344 29729350 ~ 29734672 (+)
lysmd2 lysmd2 coding downstream 304305 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 534740 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 670996 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 844030 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 1036896 31164038 ~ 31255308 (+)
LOC111194809 NA non-coding upstream 34615 30030923 ~ 30033401 (+)
G161599 NA non-coding upstream 34795 29965301 ~ 30033221 (+)
LOC111194812 NA non-coding upstream 193704 29870910 ~ 29874312 (+)
G161532 NA non-coding upstream 251416 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 343895 29723894 ~ 29724121 (+)
G161620 NA non-coding downstream 13573 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 34962 30162104 ~ 30213901 (+)
G161677 NA non-coding downstream 89360 30216502 ~ 30216804 (+)
G161682 NA non-coding downstream 124440 30251582 ~ 30252005 (+)
G161683 NA non-coding downstream 124960 30252102 ~ 30252497 (+)
G161331 NA other upstream 951221 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1309009 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1443231 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2271512 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2948752 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 226544 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 727416 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 747896 30875038 ~ 30878327 (+)
efhb NA other downstream 1457604 31584746 ~ 31605490 (+)
G162017 NA other downstream 1941720 32068862 ~ 32148190 (+)

Expression


Co-expression Network