G161682


Basic Information

Item Value
gene id G161682
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30251582 ~ 30252005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219049
tcggtatcggggcCGATATTGACGTAATCCGACGAATCGGATATCGGGCGGGCGCTGCCgatccacttaccgatccatattccagtccaaaGCTTGAGCTGAACAATAAACCCGCCATAACGTTAACACAAAACGCATCCCTGATCAGGAttccagtttaacagtttaccctgaacccccagcagcttcagtctgcggctgactgagtaactttagctgtttatctacaaaaaagtccattatctggagagttttcactttggaaacgctgtacagcagaacggtacacgtaaagtcagcgtctgagaggtaaacagattaacaccagcagtctgttagcctagctagcactgaactgacagcagctgcattccggtgttgtgaaggtattataactacagactggagtaaactatattcataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219049 True 424 lncRNA 0.46 1 30251582 30252005

Neighbor

gene id symbol gene type direction distance location
LOC103035823 bcl2l10 coding upstream 148605 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 162872 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 223834 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 353153 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 366976 29875774 ~ 29884606 (+)
lysmd2 lysmd2 coding downstream 179442 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 409877 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 546133 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 719167 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 912033 31164038 ~ 31255308 (+)
G161677 NA non-coding upstream 34778 30216502 ~ 30216804 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding upstream 37681 30162104 ~ 30213901 (+)
G161620 NA non-coding upstream 110638 30140715 ~ 30140944 (+)
G161612 NA non-coding upstream 124440 30068016 ~ 30127142 (+)
LOC111194809 NA non-coding upstream 218181 30030923 ~ 30033401 (+)
G161683 NA non-coding downstream 97 30252102 ~ 30252497 (+)
G161686 NA non-coding downstream 24581 30276586 ~ 30276833 (+)
LOC111194810 NA non-coding downstream 25322 30277327 ~ 30287684 (+)
G161692 leo1 non-coding downstream 51745 30303750 ~ 30309405 (+)
G161695 NA non-coding downstream 63602 30315607 ~ 30321928 (+)
G161331 NA other upstream 1134787 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1492575 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1626797 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2455078 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 3132318 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 101681 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 602553 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 623033 30875038 ~ 30878327 (+)
efhb NA other downstream 1332741 31584746 ~ 31605490 (+)
G162017 NA other downstream 1816857 32068862 ~ 32148190 (+)

Expression


Co-expression Network