G161692 (leo1)


Basic Information

Item Value
gene id G161692
gene name leo1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30303750 ~ 30309405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219066
caacagaaaaaataacagCTTAATAAAAGAACATCTCTAGTcgtcctcttcttcctcctcttcatcaCTGATGACATATTTCTTTGCTTTCTTAGGGGAAGACTCCTCGTCATCCTCGGCCTTTCTCTTGCTCGAGTTTTCTCCCtcCTCATCACTGTCCAGCTTCTTGGCCTTCATTAGCCGCTGAGCTTTATCCTCGTCAGAGCCCTCATCGCTGTCGGACGAGTAGATCCTCGCTCTCTCCTCTCtcagtcctcctcctcctttgtATTTGCTCTTGATGGCGGCGAGGCTGACTGACTCCTCCCCTTCCTCGTCCTCCTCATAGCGATCAGGCTCCAGATAGCCGGTGCTCAGACCACGCTGGTGCTGCTTCTCCCGCATCCGCCTCTGCTGCGACTCACGCCGGATAGAGGCCCGCAAACGCTCCTCCTCTTtct

Function

symbol description
leo1 Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Acts upstream of or within several processes, including animal organ development; melanocyte differentiation; and xanthophore differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Is expressed in brain; eye; immature eye; pharyngeal arch; and somite. Orthologous to human LEO1 (LEO1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
RNA polymerase-associated protein LEO1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219066 True 440 lncRNA 0.53 3 30303750 30309405

Neighbor

gene id symbol gene type direction distance location
LOC103035823 bcl2l10 coding upstream 200773 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 215040 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 276002 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 405321 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 419144 29875774 ~ 29884606 (+)
lysmd2 lysmd2 coding downstream 122042 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 352477 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 488733 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 661767 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 854633 31164038 ~ 31255308 (+)
LOC111194810 NA non-coding upstream 16066 30277327 ~ 30287684 (+)
G161686 NA non-coding upstream 26917 30276586 ~ 30276833 (+)
G161683 NA non-coding upstream 51253 30252102 ~ 30252497 (+)
G161682 NA non-coding upstream 51745 30251582 ~ 30252005 (+)
G161677 NA non-coding upstream 86946 30216502 ~ 30216804 (+)
G161695 NA non-coding downstream 6202 30315607 ~ 30321928 (+)
G161696 NA non-coding downstream 14755 30324160 ~ 30325854 (+)
G161697 NA non-coding downstream 23817 30333222 ~ 30335308 (+)
G161745 NA non-coding downstream 327652 30637057 ~ 30637297 (+)
G161746 NA non-coding downstream 350915 30660320 ~ 30660727 (+)
G161331 NA other upstream 1186955 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1544743 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1678965 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2507246 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 3184486 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 44281 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 545153 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 565633 30875038 ~ 30878327 (+)
efhb NA other downstream 1275341 31584746 ~ 31605490 (+)
G162017 NA other downstream 1759457 32068862 ~ 32148190 (+)

Expression


Co-expression Network