G161696


Basic Information

Item Value
gene id G161696
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30324160 ~ 30325854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219072
CTGTAGGTCTTTTGCGGTGTAAGACTGTGTCTTTCAGGCTCTTTGCAAATAGTTTGACCCCTTTTTGGTTTAGATGAAGACGGTCATAAAGGTGTCTGTGAAGAATCTGCCCATAAAGCACTACTTGTGTGTTGGGTATGTGGGTACAGAGTCTGTAAATGTCTGAGTTGATGTTGTTGATAGTGTGTTGGGCTGTGTCCAGTCTTGGTAATAAAGTGGAGATGGTGATTGTTGCTGTAGGAAATCTCTTGCTGGCTGTCATTGCTGTTTGTTGGAGTGCTTCAGGTATGTTCCTGCTGTTCTGAGTTAGATCATTGGTCCCCGTATGAATGATGATGTGCTGAATTCCGTTGTAGTTCAGGTTTGATAGTTGATCAATGGCTTTGTTTATGGTTGGAGTCCAGATCTTTgttgaatgtttttttgggaAAAGACGTTTCATGTCTAAATATTTCCCATTAGAATCACACAGAAATAATACATCCTGTGttgtcttctgtgtgtgtggcgttgtgtgtgtgggttccTCAATGTTGAGGGagttaggtgtgagtgtgtgtgtttgtattggtGGGGTAGGTTGAGGTATGGTATGAGGAGAGGGTAGTGTAGGGCGTGGGGGTGAGGAGGTGGGAGAGGTAATGTTAGTGGACCTGGTGCAGTTTTCTCTGGTGCTTGTCTGGCTGTGTTGGGGTATCTGTGCTGGAGTGCTGAGCTGTTGAGTGATTGTGTTTAGTTCCTCTGTTATTCTCCGTAAAACTGTCCTCAGATTCTGATTATCCTCTTCCAGTTCTCTCATGGCCTGATGTAGTTCCCGGATCTCATTCTTATGTTGTAGAACTTCAGTGTAAAGTTCTCCTGCTGgtttgctgctgttgttgttttcctGAGGAGGGCAGGACAGGATTCTCTCTTTAAAATGAGTAAACTCCTGTTCCAATATAGATAGCCCTTCTCTCAGAGTCCTGATGCTGCAGGCCAGTTTAGGTGTGAGCTCCGGCTGTACTCGTGGTGTTGTAGGGCTGTGTACAGATCTGTGTACAGTGTTGTTCACTGGTGTTCTCTGTGAATctgtagtttttctttttgatgCAGCAGATTTCTTCATATTTTGAAAGCAGTTTTGAAAGTTGTGTAAGCTGTTTTCAGGTCCCTGGATCATAACTGTACCgttatgatatatatttattgttaggATGGGGCATGTGTACTCAGCATCTTCATATGTAGTGATTTGTCTGCCTTTGCTTATTCCGTTTTTCTTTATGTAAGTGAAAGAATCACTGATCACTGTATGCCAGTCTGCAGGGTGATGGGTGGAGAAGAGCAGGTTACACATTACCTTTAGATTGTTCTTTGTAGTGAAATCTGCCACTAAAGTTTCTGGGTTGTCAGACAGGATTTTTGTTTTGAATATTTTCCTGGCGTTTGCTGATTTGACGTGCGGTGGATACTGCACCTCGCTGCCGTTCAAGTATAGCGAGTGTCCGCTGGAAGCGCTGGGTCCGCTGGAAGCGCTGGAAGCGGCCGTTTCCAttttccgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219072 True 1668 lncRNA 0.44 2 30324160 30325854

Neighbor

gene id symbol gene type direction distance location
LOC103035823 bcl2l10 coding upstream 221183 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 235450 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 296412 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 425731 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 439554 29875774 ~ 29884606 (+)
lysmd2 lysmd2 coding downstream 105593 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 336028 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 472284 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 645318 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 838184 31164038 ~ 31255308 (+)
G161695 NA non-coding upstream 2232 30315607 ~ 30321928 (+)
G161692 leo1 non-coding upstream 14755 30303750 ~ 30309405 (+)
LOC111194810 NA non-coding upstream 36476 30277327 ~ 30287684 (+)
G161686 NA non-coding upstream 47327 30276586 ~ 30276833 (+)
G161683 NA non-coding upstream 71663 30252102 ~ 30252497 (+)
G161697 NA non-coding downstream 7368 30333222 ~ 30335308 (+)
G161745 NA non-coding downstream 311203 30637057 ~ 30637297 (+)
G161746 NA non-coding downstream 334466 30660320 ~ 30660727 (+)
G161755 NA non-coding downstream 363861 30689715 ~ 30689944 (+)
G161754 NA non-coding downstream 369685 30695539 ~ 30696723 (+)
G161331 NA other upstream 1207365 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1565153 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1699375 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2527656 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 3204896 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 27832 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 528704 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 549184 30875038 ~ 30878327 (+)
efhb NA other downstream 1258892 31584746 ~ 31605490 (+)
G162017 NA other downstream 1743008 32068862 ~ 32148190 (+)

Expression


Co-expression Network