G161746


Basic Information

Item Value
gene id G161746
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30660320 ~ 30660727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219140
ggggcggcacggtggcgcagtgggtagcacttccgcctcacagcaagacggcctgggttcgattcccggctggggcgacccaggtctttctgtgtggagtttgcacgttctccccgtgtctgcgtgggtttcctccgggttctccggtttccccccacagtccaaagacggcacgttcaggctaattggaacttggttgaaaattgccccttaggtgtgagtgtgtgagtgaatgtgtctgtactGTTACCGACCTACGAGTCCTCTTCTGAGGACGAGATCATAGAACCTTGTGAATAGACGTTACCTATCCTGCCACGAAATAGCTGACGAGCTGATGTGGCTTTAAACTCGACTAACTTGACCTGacaaataagtagtaattaagtacaaatgattgtatgttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219140 True 408 lncRNA 0.51 1 30660320 30660727

Neighbor

gene id symbol gene type direction distance location
lysmd2 lysmd2 coding upstream 218444 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 557343 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 571610 30036411 ~ 30088710 (+)
myo5a myo5a coding upstream 632572 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 761891 29889893 ~ 29898429 (+)
LOC111194807 NA coding downstream 1155 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 137411 30798138 ~ 30800224 (+)
LOC103039032 NA coding downstream 310445 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 503311 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 720490 31381217 ~ 31514641 (+)
G161745 NA non-coding upstream 23023 30637057 ~ 30637297 (+)
G161697 NA non-coding upstream 325012 30333222 ~ 30335308 (+)
G161696 NA non-coding upstream 334466 30324160 ~ 30325854 (+)
G161695 NA non-coding upstream 338392 30315607 ~ 30321928 (+)
G161692 leo1 non-coding upstream 350915 30303750 ~ 30309405 (+)
G161755 NA non-coding downstream 28988 30689715 ~ 30689944 (+)
G161754 NA non-coding downstream 34812 30695539 ~ 30696723 (+)
G161763 NA non-coding downstream 98617 30759344 ~ 30796827 (+)
G161775 NA non-coding downstream 185003 30845730 ~ 30846030 (+)
LOC103039351 NA non-coding downstream 229606 30890333 ~ 30915250 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 246108 30353686 ~ 30414212 (+)
G161331 NA other upstream 1543525 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1901313 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 2035535 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2863816 27784896 ~ 27796504 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 193831 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 214311 30875038 ~ 30878327 (+)
efhb NA other downstream 924019 31584746 ~ 31605490 (+)
G162017 NA other downstream 1408135 32068862 ~ 32148190 (+)
G162032 NA other downstream 1575589 32236316 ~ 32295029 (+)

Expression


Co-expression Network