hmgn2


Basic Information

Item Value
gene id hmgn2
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30875038 ~ 30878327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219178
TTGTATTGAAGCTTTGTGTGGAGAGCAGCGCGGTGCAGAGCCTTGCCGAGGAAAAACAACAAACCTacatttccctctttttttacaCGGTTTTTCAAGCGCCAAGATGCCCAAAAGAAAGGCTGACGGAGAGAAGGCTGCCAAAGGCAAGGAGGAGccaaCTAGACGCTCCGCAAGGCTGTCTGCTagACCAGCCCCTCCTAAACCCGCCCCAAAGCCGAAAAAAGCTGCCCCCAAGAAGGCAGCCAAAGGGAAGAAGGCCAACCCTGCTGAAAATGGAGAGGCCAAGGCAGACCAGGTATCCTGAAGACACCTGGCTACACTGCAGACTTTACAGCATAAATGCGCAAAAGGTTGAAGCTGCAGCAGACGCCAAATGAGAAGCGATTGAATTGTTTAATTCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACcaagttttatattaagaataTCGTTTATAGTTTAATTGTTGTTTGCTTTCATATCCATTTATGCCCCATCATTAATGAAGCCGCCCACCTTGCCAAAATGGCTGAATTGGTTTTTACACCCATGAATGTTTtggtattttattacattttgggtttttaaaatatattttaaacaccaAACATTCTCATAAGGCAGCtatagtgtgtttttaaaatggtATGGGAAAgagttttttccatttttttttcttttttaattttcattttccttttttatttgtgtacttaacaatactgtattttactttttttcattatgttcttattaacacagttaaaaacaaaatgactaaattgtgaGTAGGAAAAtcaaccatgattaattaaatttgcAGGATGAAATTAACGAGTTTCttcaaactgttaaaatgtcgtTTTTATTAAGTTATACGCTCCAATATTGGAAGGATGTTTTGTGACTCCTAAAATTACTTGTTCTGAATggttttgaataaaataaaaatttcaaA
>TU219179
TTGTATTGAAGCTTTGTGTGGAGAGCAGCGCGGTGCAGAGCCTTGCCGAGGAAAAACAACAAACCTacatttccctctttttttacaCGGTTTTTCAAGCGCCAAGATGCCCAAAAGAAAGGCTGACGGAGAGAAGGCTGCCAAAGGCAAGGAGGAGccaaCTAGACGCTCCGCAAGGCTGTCTGCTagACCAGCCCCTCCTAAACCCGCCCCAAAGCCGAAAAAAGCTGCCCCCAAGAAGGCAGCCAAAGGGAAGAAGGCCAACCCTGCTGAAAATGGAGAGGCCAAGGCAGACCAGGCGCAAAAGGTTGAAGCTGCAGCAGACGCCAAATGAGAAGCGATTGAATTGTTTAATTCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACcaagttttatattaagaataTCGTTTATAGTTTAATTGTTGTTTGCTTTCATATCCATTTATGCCCCATCATTAATGAAGCCGCCCACCTTGCCAAAATGGCTGAATTGGTTTTTACACCCATGAATGTTTtggtattttattacattttgggtttttaaaatatattttaaacaccaAACATTCTCATAAGGCAGCtatagtgtgtttttaaaatggtATGGGAAAgagttttttccatttttttttcttttttaattttcattttccttttttatttgtgtacttaacaatactgtattttactttttttcattatgttcttattaacacagttaaaaacaaaatgactaaattgtgaGTAGGAAAAtcaaccatgattaattaaatttgcAGGATGAAATTAACGAGTTTCttcaaactgttaaaatgtcgtTTTTATTAAGTTATACGCTCCAATATTGGAAGGATGTTTTGTGACTCCTAAAATTACTTGTTCTGAATggttttgaataaaataaaaatttcaaA
>XM_007236248.3
CCGGTTTCTATcttatatttcaatataaaaactaaataaacattgGGCCGTTATTGTATTGAAGCTTTGTGTGGAGAGCAGCGCGGTGCAGAGCCTTGCCGAGGAAAAACAACAAACCTacatttccctctttttttacaCGGTTTTTCAAGCGCCAAGATGCCCAAAAGAAAGGCTGACGGAGAGAAGGCTGCCAAAGGCAAGGAGGAGccaaCTAGACGCTCCGCAAGGCTGTCTGCTagACCAGCCCCTCCTAAACCCGCCCCAAAGCCGAAAAAAGCTGCCCCCAAGAAGGCAGCCAAAGGGAAGAAGGCCAACCCTGCTGAAAATGGAGAGGCCAAGGCAGACCAGGCGCAAAAGGTTGAAGCTGCAGCAGACGCCAAATGAGAAGCGATTGAATTGTTTAATTCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACcaagttttatattaagaataTCGTTTATAGTTTAATTGTTGTTTGCTTTCATATCCATTTATGCCCCATCATTAATGAAGCCGCCCACCTTGCCAAAATGGCTGAATTGGTTTTTACACCCATGAATGTTTtggtattttattacattttgggtttttaaaatatattttaaacaccaAACATTCTCATAAGGCAGCtatagtgtgtttttaaaatggtATGGGAAAgagttttttccatttttttttcttttttaattttcattttccttttttatttgtgtacttaacaatactgtattttactttttttcattatgttcttattaacacagttaaaaacaaaatgactaaattgtgaGTAGGAAAAtcaaccatgattaattaaatttgcAGGATGAAATTAACGAGTTTCttcaaactgttaaaatgtcgtTTTTATTAAGTTATACGCTCCAATATTGGAAGGATGTTTTGTGACTCCTAAAATTACTTGTTCTGAATggttttgaataaaataaaaatttcaaAAGAATATCCCCTTTA
>XR_002651288.1
AGCTCCGAACGCCAAATCTGGTTTAAACCGGTTTCTATcttatatttcaatataaaaactaaataaacattgGGCCGTTATTGTATTGAAGCTTTGTGTGGAGAGCAGCGCGGTGCAGAGCCTTGCCGAGGAAAAACAACAAACCTacatttccctctttttttacaCGGTTTTTCAAGCGCCAAGATGCCCAAAAGAAAGGCTGACGGAGAGAAGGCTGCCAAAGGCAAGGAGGAGccaaCTAGACGCTCCGCAAGGCTGTCTGCTagACCAGCCCCTCCTAAACCCGCCCCAAAGCCGAAAAAAGCTGCCCCCAAGAAGGCAGCCAAAGGGAAGAAGGCCAACCCTGCTGAAAATGGAGAGGCCAAGGCAGACCAGGTATCCTGAAGACACCTGGCTACACTGCAGACTTTACAGCATAAATGCGCAAAAGGTTGAAGCTGCAGCAGACGCCAAATGAGAAGCGATTGAATTGTTTAATTCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACcaagttttatattaagaataTCGTTTATAGTTTAATTGTTGTTTGCTTTCATATCCATTTATGCCCCATCATTAATGAAGCCGCCCACCTTGCCAAAATGGCTGAATTGGTTTTTACACCCATGAATGTTTtggtattttattacattttgggtttttaaaatatattttaaacaccaAACATTCTCATAAGGCAGCtatagtgtgtttttaaaatggtATGGGAAAgagttttttccatttttttttcttttttaattttcattttccttttttatttgtgtacttaacaatactgtattttactttttttcattatgttcttattaacacagttaaaaacaaaatgactaaattgtgaGTAGGAAAAtcaaccatgattaattaaatttgcAGGATGAAATTAACGAGTTTCttcaaactgttaaaatgtcgtTTTTATTAAGTTATACGCTCCAATATTGGAAGGATGTTTTGTGACTCCTAAAATTACTTGTTCTGAATggttttgaataaaataaaaatttcaaAAGAATATCCCCTTTA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU219178 False 979 TUCP 0.37 6 30875118 30878312
TU219179 False 933 TUCP 0.37 6 30875118 30878312
XM_007236248.3 False 1001 mRNA 0.36 6 30875065 30878327
XR_002651288.1 True 1074 misc_RNA 0.37 6 30875038 30878327

Neighbor

gene id symbol gene type direction distance location
LOC111194808 LOC102215143 coding upstream 74814 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 202769 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 433162 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 772061 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 786328 30036411 ~ 30088710 (+)
LOC103039032 NA coding downstream 92845 30971172 ~ 30983860 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 285711 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 502890 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 809725 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1498774 32377101 ~ 32565890 (+)
G161775 NA non-coding upstream 29008 30845730 ~ 30846030 (+)
G161763 NA non-coding upstream 78211 30759344 ~ 30796827 (+)
G161754 NA non-coding upstream 178315 30695539 ~ 30696723 (+)
G161755 NA non-coding upstream 185094 30689715 ~ 30689944 (+)
G161746 NA non-coding upstream 214311 30660320 ~ 30660727 (+)
LOC103039351 NA non-coding downstream 12006 30890333 ~ 30915250 (+)
G161797 LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482 non-coding downstream 149661 31027988 ~ 31035682 (+)
G161808 NA non-coding downstream 221241 31099568 ~ 31190249 (+)
G161816 NA non-coding downstream 313954 31192281 ~ 31199747 (+)
G161818 NA non-coding downstream 341011 31219338 ~ 31220183 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 460826 30353686 ~ 30414212 (+)
G161331 NA other upstream 1758243 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2116031 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 2250253 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 3078534 27784896 ~ 27796504 (+)
efhb NA other downstream 706419 31584746 ~ 31605490 (+)
G162017 NA other downstream 1190535 32068862 ~ 32148190 (+)
G162032 NA other downstream 1357989 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1835856 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4929538 35807865 ~ 35814793 (+)

Expression


Co-expression Network