G161797 (LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482)


Basic Information

Item Value
gene id G161797
gene name LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31027988 ~ 31035682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219206
tactgaaattcccacaggtgcctaaaacttttgcgcagtactgtatatttggaTTTGTTCCATACTCAGAACCAGTCGTTTTAGGGTCTAATCCCAAATTGAATCCATCAGCAATGATTTCTTTGGTGAAATTGGGATATATATTTGGGTTTGTATCAGAGCTATATTAGCTTACTGTGCAATGAGCatcaaaaaacatgttttaataatCACAGATTAGCCTGACATCCTGTAAACATCCTAGTTTTgtgattttggaaaaaaaaaacgcaagaACCTTTGTCCAAACGATATTGGGTCCGTCCTAATTGCGTACAAATTACTAACGCTAACTAGTTCTTGAGTAAACTGGTTacataaatgtgtaaaatgtgttgaGTATACTCAAATATACCCAATTAATACATACCAGTCATTTTTGGAGTCTAATCCTAAATGTAATCAATCAGCAATAATTTCTTTGGTAAAATTGGAGCTacagagctaatgctaatatagGCTATATATTAGCTTATACCTTGCAATTAGCATCAAAACAACATGTTTCAATAATCACAGATTAGCCTGAAGCCATGTGGACATCCTATTTATGTGGTTTTAGACAAATGGACCCAAGAACCTTTGTCCAAAAAATATTGGGTGCGTCACAATTGCGTATAAATTACTAATGGTAACTAGTTCTTGAGTAAACCGATTagataaatgtgtaaaatgtgttggGATGTATTAAGATCTATATTGAGTATATCTTCTCTGTCCAATAAAAATCAAGTATCTCCTTTTTTCAAGTATTTTCTtggtgaatggaccaatagaaatacttcaaaataacctgaaatcaactatttttacattgacttccattgaaactttacaaggttttttctctctcctgtaaagttgctgttctggagagacttgtttttcattggacagcgaccaATCgtagtattagtgtgtagtgtagtacgCATTTGGGACGCAGCCCTAGGCTTTATGATGGGTTTAATTTTTTGTACATATAACAGTGTTGGAAACcagattttacattatttaaccaATCAGCACAGCTGACTCGTTCCATTTGGTGGGTTTAAAACGTCTGAACGTTATTTGGTGGTGGTTCTCTCTTTGGTCTGAAGTTGATGATTAGCTTTAGCGGTTAGCTGTAGCAGTAGATAGTATCTCACTTTGCATATatataaatctctctctctctccagttcAGTGCATCAGTGCATTAGCAGCTCTGCCGAGCGGGGGTCCGGCCGTCCGTCCGTTCGTTCCAACGCCTGCGTTTGGGAGGGGGGCAGAAAACTGGGCCAGTTGGGGAAGGAGGTACACATGGTTcacttcacactcacacattaaTCCCCACGTCTGGGAAGAAGAAAAGCTTAGTAGTCCTCCGTTTTCAATTATTCATCCACTGAGATGTGCATCAGCAAAAAGCACTGCTTTCTCAgacaacaagaacaaaaaaaaacgtaaagaGAATATGGCTAATTTCAcgcaaaaacctttttttaatctcGATTTTTGATGTTTCTTGTGAATTGGGCAGTAGTTCTTAACATTTTCACCAAATTTGACGATaattggaccaatagaaatggtccaaaatgacttggaataaaatcgTTTTACACCGATTTCCACTGAAGttcctgtaaatttgctgttttaagaGATTTTGCAAGGTTTTTGCAGGACAGTGAAACAATACTCATGTTTTTAAGTGAGCTCAACAAAAAGAGATGACCAGGTTACAGCTCAATGCACAAAATCtagaaaatgacagaaaatgttacatagttctgtaaaaaaaaagttttttctcCATAAGTCATCTAAAATATGTGTTTGGTGCCTGTAAGTGCCTGAAGTTGGCTTCCTATAGCTGTGAACAAGAGCTATGagggtaatgtagctaacatgtAATGGATTGagatcattttttcattttataacaATGTGAACCACATTTTACTTAAACCACATTATGTAAGActccttaaaataatataaatcagCTTAAAGTAGGCATGGCTACATTTACTGTGCAGATAAAGAGTCcgaaatcttttttttgtttagttttatgctttttttaggCTTGtcagattacatttttatgGGACTTCTATTTTTCAAGACAGTTCAGGCTCCTAAACTGATGCTAATGCATTAATAAGCagcgcttcacgtgaagtttcggtttcatcttctccagaATCCCTAGGAACTATCAAGCCAATGTACTGGCTGCAGCTGGGCTCTAAAGAGACACATATTACTTTCACTTCTTTGGTTTCTTTGAACTGTAGAACAACTTTAAACCTGGATTGGAATGGATTGCAATAAGGGTCTTCTAAAGGGCTGTccattttcactttttctcagacacttttaaactaaatgttgagtagatatatatatatgtcatcaATTCcgaactggctgtagaaactgaatcacatacacattcacattcagaTTCGCAGTTAATAGATTATATTTAGGGCATTTATGACATTTTCACAtgagctacattagcctcttaGCTCTTAGGAAGCTTCCGACAAACAACTTCAGACAACAAACAGATATACAACCATTAAAGGGAAGAACTgtgcaatttaattttttttgccaaaCTACTGCAATAAGGACCCGCAATATTCCTGAATATTTCaaagtctctctcacacacaaaaatgccaccatgaaaataaaataaatagagcaTATTAGCTTTATCAGAAGTATGACAACCCTGCGTCATGCATGTAGTCCTTAAACAAGAGCCAGAGGTCCACTAGTCTGAGAGGACTGCTGGCTACACGGTTGACTCTTTTGGACCTTTGGCCGTTTCCCGTGTAGCGTTCTTGCAGCCGTAAAGCCACTTGATTACTCGGGCGTTCCTCTCGATGATAGACACTCCTGTGGGCGCCTGCTCGGCTACTTCCTCTTGGACCAACCCTTCCCCTGAATGGCGGGAGAACTCGCTGGGTTCTgagccgcctcctcctcctcctacgCTGCGGAGGACAAGCGAGAGCGAGTCGGCCGAACTACCCCCCGAGAGGAAGTTCTCAGCCCCAAGACGGTCCACCATGTCTCGGTCAAGTCCGCAAAAGTCAAAGAAGCGCTCCTGCTCGGAAAGAGCTACCGAGACACGGAGGTGAAGGTCCGATTCAGAGCGTCGCAAGCTCGCCCGAAGCCAAGGGTTCTGGATTTTCCCATTCCCGTTGTCTGGCACGTCTCGGAAGGTATTCACGATGGGATTTGAAGGCTCTAGGAATCCGCTGTTGCCGTTGTTGGATTCTGCCGTCCTGCTCGACCTCCTGGTCTCGGTGCCGCCATCAGAAATGTCCCGGTCGATTGACCACGACATGCGCGAGTCGCCGTCTCGAGACGAACCCTTTTCCTCGCTGATTGTCGACTTCGAGTTCTTCTCTCTCATGGACCCCTGAAAGAGGCGTCGGACGAAGCTGTACCCCTTCACCTCCGAGCTCATGGTTCCACTACTTCCGCTATTGTTGGGACTCTTGCACTCTTTCTTCTGCCTGTAGATGACGAGCGAATCTGGCCGCAGCATACGCTTTCCCGTACTTCTCCGCAGAATGGGGGCACTATGAGGCGCCACCAGAGCTGCCCTGACGGGGCTCCTCGGGACTAGCGGAGGCAGCCGGTTGAAGTTGTTGCAGTTCTGAAGCTCTGGGTCTCGCCGGTTTTCCTTCCTGGAGTCGTCCTCATTGTCGTCGCTGGCTGAGTTGCTGGAACCCTGTAGAAACTGGGTGGACCGGGCGTGGCAGTAACCAGCGGCCGCCGTGGCAGGACCGGCGTGGAGGTGACGGGTACTGTGAAGTTGCGGCGTGGCTGGGGCGGTGGAGTTCCACAGGGCACCAGTACGGGCTCCTGCTTGGTGTTGATCACCTGCTGGGTCTTGACGTATTTGGCTTTGTCAGCTTCGAGTCTCTCCACGGCGCTGATGGTGGAGCCGCCGCGGCTCCCGCTGTCGATCTGCCGCCGAAGGTAGTCCGGACCCTTGTTGAGGAGTCGCAGGGGCGAGGGGGAACCAATGGGCGTTAGTGGCTTCATTGCTTCTTAGGGTTCTTGTGGGAAAAGGCAGCGGCATCCAATGGCAGCCTTGGTCTACAGGCTTGGTCTACAGGTCTACAAGTGGTTTGGAGGTCTGGAGTTAATCGTAATCAACTTATTTGTTGCTCTGGGATGACTATACTTCCTGTACTTTCTTTGTACTTCCTTTGTTACGCCTGGTTTTCAATCTGGACACTTCCGGATTGAGGAAAAGTTGATATCTCCACACGGTATATACCCAACCACTGGATTAAAATGGGCAAGGCATTTTTTTGGCCAGTTTGATTTAAACTTTTTGGAAATTTGGGTTTAAATGGGGGTCAGAGTTGGATAAGGCTGCAACAAATAGTAAAgataatctaataaaataaaaatctattaaaaatctTCGGCTGCAAATATTAGTGTCGACTAATAGTCGATTTCAAACTACAATGcactacacaaaaataaaaaaaacgttgaaaaaaACACAACGGGGGGATAAATAAGGGCTGCTCAATCATTCAGCTCATTATTTTATATCTaagtttctctaattttcttcagataggccaattgtcccacccatttagctgctatTCAGCTGTGCTTGGTCTACAAGTGGTTGTACAACAAGTGGTTTGGAGGTGTGGAGATAATCGTAAGACTTGTTGTTGCTTAGAGATAAAAGTAGTCTATAAAAGTAGAGAGCAAAAAGTTCAAAACATCCAATTGGGCATGTTCCTACTGAAGATATCCATGCTGTACTTCCTTTGTTACGCCTAGTCTCCAATCTGGACACTTCCGGAACGAGGAAAAGTTGATATCTCCACACGGTATTTATTCAACCACTGGATTAAAATGGGAAGGGCACGGGGAAATCCTTTCGCCTCCttccaaaaaaaacacttgttcCAAATGAGATGTTCTTTGCGCCACAGAGCAGCAGAAATAGAAAGCTCCAGTCTTTCTTTTTGTCCTCTAACTCTGACAGAACTTACTCTACTCAAGAGTCTTTCCAGGCAAGGTCATCTTGAGGTGGAGATTGGTTTTGCGTTGGTTGTTTGCTTTCTGATtgctgctgccgccgccgtCGTTGTTGGATTCTTGGAGCCAGGCTTGGAGCGACTGGTCCAACTTCGAGACAGTTTGACCTCTGATTAAGGTTTTTGGAGGTTTGACTTGAACTCCTGTGGAAACAGaaggagaaacagagaaagaaagagagattaaaAGTCAGGTAAGGTTTCCCTGTA

Function

NR:

description
PREDICTED: protein FAM110A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219206 True 5342 lncRNA 0.43 2 31027988 31035682

Neighbor

gene id symbol gene type direction distance location
LOC103039032 NA coding upstream 44128 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 227764 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 355719 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 586112 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 925011 30090299 ~ 30102977 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 128356 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 345535 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 652370 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1341419 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1646060 32681742 ~ 32701604 (+)
LOC103039351 NA non-coding upstream 112738 30890333 ~ 30915250 (+)
G161775 NA non-coding upstream 181958 30845730 ~ 30846030 (+)
G161763 NA non-coding upstream 231161 30759344 ~ 30796827 (+)
G161754 NA non-coding upstream 331265 30695539 ~ 30696723 (+)
G161755 NA non-coding upstream 338044 30689715 ~ 30689944 (+)
G161808 NA non-coding downstream 63886 31099568 ~ 31190249 (+)
G161816 NA non-coding downstream 156599 31192281 ~ 31199747 (+)
G161818 NA non-coding downstream 183656 31219338 ~ 31220183 (+)
G161826 NA non-coding downstream 210399 31246081 ~ 31246877 (+)
G161831 NA non-coding downstream 275849 31311531 ~ 31311803 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 133482 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 149661 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 613776 30353686 ~ 30414212 (+)
G161331 NA other upstream 1911193 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2268981 28745696 ~ 28759007 (+)
efhb NA other downstream 549064 31584746 ~ 31605490 (+)
G162017 NA other downstream 1033180 32068862 ~ 32148190 (+)
G162032 NA other downstream 1200634 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1678501 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4772183 35807865 ~ 35814793 (+)

Expression


Co-expression Network