G161816


Basic Information

Item Value
gene id G161816
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31192281 ~ 31199747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219228
TATAAAAAATAGTTGACGTGGAAATTCATTGTCAATGCGAcaatagtgtgtaatagagagagagagagagagaacacaaagtgagagagtgacaaatcctgagcatcctgattggcctctcctCATGCTTAGTTGGCCAATAAGGTTTcagtgtgggtgggacttgcaCCTCAACAGAGCGGGAGAGACGTGTATACAGTGTAATAGCAGCGCTGTgtccattaaacacaaataagCACATATAACTCCACACAACACTCTACAGTCAGTCAGGGGTGTGgtgagacactaatatcacgagacgagacacgatactgggttcacgagaacgagacgagatttaaaaataaaattttaaagaaaacgtcaaaaatgaaaaatggcttgaaaactagttttatttgacaaaatcatataacgcaaacttaacagactggtttctctcacacattgatttcataagaaatagaaataagaataaaaaataaaaataaaacttttctaggtcttatatagtgcaaaaaataagttCAAACT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219228 True 537 lncRNA 0.36 2 31192281 31199747

Neighbor

gene id symbol gene type direction distance location
LOC103039032 NA coding upstream 208421 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 392057 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 520012 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 750405 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 1089304 30090299 ~ 30102977 (+)
znf385d znf385d,LOC107688204 coding downstream 181470 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 488305 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1177354 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1481995 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1521497 32721244 ~ 32729851 (+)
G161808 NA non-coding upstream 2032 31099568 ~ 31190249 (+)
G161797 LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482 non-coding upstream 156599 31027988 ~ 31035682 (+)
LOC103039351 NA non-coding upstream 277031 30890333 ~ 30915250 (+)
G161775 NA non-coding upstream 346251 30845730 ~ 30846030 (+)
G161763 NA non-coding upstream 395454 30759344 ~ 30796827 (+)
G161818 NA non-coding downstream 19591 31219338 ~ 31220183 (+)
G161826 NA non-coding downstream 46334 31246081 ~ 31246877 (+)
G161831 NA non-coding downstream 111784 31311531 ~ 31311803 (+)
G161834 NA non-coding downstream 173230 31372977 ~ 31528197 (+)
G161835 NA non-coding downstream 175715 31375462 ~ 31518161 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 297775 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 313954 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 778069 30353686 ~ 30414212 (+)
G161331 NA other upstream 2075486 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2433274 28745696 ~ 28759007 (+)
efhb NA other downstream 384999 31584746 ~ 31605490 (+)
G162017 NA other downstream 869115 32068862 ~ 32148190 (+)
G162032 NA other downstream 1036569 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1514436 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4608118 35807865 ~ 35814793 (+)

Expression


Co-expression Network