G161831


Basic Information

Item Value
gene id G161831
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31311531 ~ 31311803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219244
atcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtctgtcatctgctggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219244 True 273 lncRNA 0.42 1 31311531 31311803

Neighbor

gene id symbol gene type direction distance location
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 56223 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 327671 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 511307 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 639262 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 869655 30431447 ~ 30441876 (+)
znf385d znf385d,LOC107688204 coding downstream 69414 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 376249 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1065298 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1369939 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1409441 32721244 ~ 32729851 (+)
G161826 NA non-coding upstream 64654 31246081 ~ 31246877 (+)
G161818 NA non-coding upstream 91348 31219338 ~ 31220183 (+)
G161816 NA non-coding upstream 111784 31192281 ~ 31199747 (+)
G161808 NA non-coding upstream 121282 31099568 ~ 31190249 (+)
G161797 LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482 non-coding upstream 275849 31027988 ~ 31035682 (+)
G161834 NA non-coding downstream 61174 31372977 ~ 31528197 (+)
G161835 NA non-coding downstream 63659 31375462 ~ 31518161 (+)
G161847 NA non-coding downstream 243626 31555429 ~ 31559544 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 259291 31571094 ~ 31573854 (+)
G162001 NA non-coding downstream 524423 31836226 ~ 31836672 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 417025 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 433204 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 897319 30353686 ~ 30414212 (+)
G161331 NA other upstream 2194736 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2552524 28745696 ~ 28759007 (+)
efhb NA other downstream 272943 31584746 ~ 31605490 (+)
G162017 NA other downstream 757059 32068862 ~ 32148190 (+)
G162032 NA other downstream 924513 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1402380 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4496062 35807865 ~ 35814793 (+)

Expression


Co-expression Network