G161834


Basic Information

Item Value
gene id G161834
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31372977 ~ 31528197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219251
tgaaactgaaacacctggttttagagcacaataatttatagtggtgatggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggatcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtgtgcattgcaatattttgagcagaactgtgctcttaccctgctaattgaaccttcacactcttactgctcttactggtgcaatgtgcaattaatgaagattgaacatgaagatgaacaccaggctgctccaatttagccatgatgaaacctcccacactaaaatgataggtgtcccatgacttttgccaagcTCCCATAGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219251 True 569 lncRNA 0.44 4 31372977 31528197

Neighbor

gene id symbol gene type direction distance location
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 117669 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 389117 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 572753 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 700708 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 931101 30431447 ~ 30441876 (+)
satb1 satb1,LOC107569796 coding downstream 159855 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 848904 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1153545 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1193047 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1253877 32782074 ~ 32879256 (+)
G161831 NA non-coding upstream 61174 31311531 ~ 31311803 (+)
G161826 NA non-coding upstream 126100 31246081 ~ 31246877 (+)
G161818 NA non-coding upstream 152794 31219338 ~ 31220183 (+)
G161816 NA non-coding upstream 173230 31192281 ~ 31199747 (+)
G161808 NA non-coding upstream 182728 31099568 ~ 31190249 (+)
G161847 NA non-coding downstream 27232 31555429 ~ 31559544 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 42897 31571094 ~ 31573854 (+)
G162001 NA non-coding downstream 308029 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 343826 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 560146 32088343 ~ 32091024 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 478471 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 494650 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 958765 30353686 ~ 30414212 (+)
G161331 NA other upstream 2256182 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2613970 28745696 ~ 28759007 (+)
efhb NA other downstream 56549 31584746 ~ 31605490 (+)
G162017 NA other downstream 540665 32068862 ~ 32148190 (+)
G162032 NA other downstream 708119 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1185986 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4279668 35807865 ~ 35814793 (+)

Expression


Co-expression Network