G161835


Basic Information

Item Value
gene id G161835
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31375462 ~ 31518161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219254
gagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaccCCTCCCCCTGAGTCTACCCCTGCAGAACTCTACACAGGTCACCTGGATGACGAAGCTTGTCTCTCTCATCTagcaatgtgaaaaaaatgaaaagatgaaaattaaaagatgaacaattttaaat
>TU219255
tgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaccCCTCCCCCTGAGTCTACCCCTGCAGAACTCTACACAGGTCACCTGGATGACGAAGCTTGTCTCTCTCATCTagcaatgtgaaaaaaatgaaaagatgaaaattaaaagatgaacaattttaaat

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219254 False 191 lncRNA 0.43 2 31449737 31518161
TU219255 True 201 lncRNA 0.43 3 31375462 31518161

Neighbor

gene id symbol gene type direction distance location
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 120154 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 391602 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 575238 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 703193 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 933586 30431447 ~ 30441876 (+)
satb1 satb1,LOC107569796 coding downstream 169891 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 858940 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1163581 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1203083 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1263913 32782074 ~ 32879256 (+)
G161831 NA non-coding upstream 63659 31311531 ~ 31311803 (+)
G161826 NA non-coding upstream 128585 31246081 ~ 31246877 (+)
G161818 NA non-coding upstream 155279 31219338 ~ 31220183 (+)
G161816 NA non-coding upstream 175715 31192281 ~ 31199747 (+)
G161808 NA non-coding upstream 185213 31099568 ~ 31190249 (+)
G161847 NA non-coding downstream 37268 31555429 ~ 31559544 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 52933 31571094 ~ 31573854 (+)
G162001 NA non-coding downstream 318065 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 353862 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 570182 32088343 ~ 32091024 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 480956 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 497135 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 961250 30353686 ~ 30414212 (+)
G161331 NA other upstream 2258667 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2616455 28745696 ~ 28759007 (+)
efhb NA other downstream 66585 31584746 ~ 31605490 (+)
G162017 NA other downstream 550701 32068862 ~ 32148190 (+)
G162032 NA other downstream 718155 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1196022 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4289704 35807865 ~ 35814793 (+)

Expression


Co-expression Network