G161847


Basic Information

Item Value
gene id G161847
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31555429 ~ 31559544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219267
AGAAGTACAAGACAGACCACTGGGTAAATGTCAAGTCGATTTGTTAATAACACTacatacatgaaaaaaaagactATCATCATACATTATTTGACCAAATCTGTGAAAAGAAAGGCTTTTTAAAGGGAACTGTACAATAAAGAAGAGTGCATACATACTGTCTTTCATGGCGAGCGgttggagtagcattagcttgTTGAGATGGATGcatcaatatattgatatattgggatttctttattttatattaccaGACAGAGCATTTGTTCATAGACTGTCTTGGCCTTTTCTAAAAGTGAGTGCTTATACATGAAgttcataatctgattactgcagattATCAAAGTTAgtctgattaatctgattaacaCGTTTTTCATGATTGTGGGCAATCAGATAACAGGAAATCTCAGAGTTATAGGAATATAATATAGTCAGGTTATAATAAttcataccacagttagttcagaccctgcgatgtgattggctgagaagcgttctatgagtgctgttatcagctggtaatgcactgtaaccgaagctctccatatATTACTCCggcacatacaggtaacctagcaacgattaCAAGCcaagcgcttacaaaccaaacagcgcagctacaaacagagcagcaatggaactattttaactcgcagagtttttataaccaaacagattgtatttttttcctcctctttaactcaaaatcttttaataaaaagcgataatgaaactgtggtatagttgcaataatacactcgagattcgtgctataacatgtaatattggcacttgaccgcagcacagcagtgctaaTATTACACGTTACAGCACTCCCTCGTGTTTTATAGCGTACATAAATTTTGACGGAAACATCACATAAAACCCACTAAGCCAAAATATGAGTTTTAAACACTGCTTAATAAATTCTTGGACTACCgggtctattttcacacatgcacagacaATACTCAGGTTAGGAGTTTACATGGACTAAGAAATCTGAGTACAGagctaacaaaacaaaatcagagTTCTTAATCAGattttaagaccttttaagGGTTTACATGGGCTAATTACTGATTCTAATTACTGAGctgaaaaaaatccagctcccttaatcagatttttagcTCTTACTCCAATCTAAGAAGCTAGGGAATGCTGTTTTCATGTCTACGTAAATAATCCAGTTCATTACTGCAGAAATCTGATTATGAACAGATTTTTGAGGGCATGTAAACGCACTCAGTGACTTTTATAAAAGGTGCAGTCTTATCACTTATAACTTATCACTTTTTGAATGTGGCTACAGTGGCACAATACTGCATCAATCCTGCTGTGTTGAGAGCCAATCGTGGCTGTTCCAGACCTTATGACTGAACAGGAACAGTAGGTCACCAAAGCCTTCTCATATCAGAGAACAGAGGGGCTTTTCTCCACCCTGAACTGCCTCTCGTTAGCTTGTTACCCGGACAGAGCAGCAATAGTTTATGTGGAACATGTAAAGACTGAAAACATGGATACAGTGAGAGCAGAGGCATAAACAGTAGTCAAAACAGCAGGAATTGATTATGACTCAACTGCAACTAGATTGGAAATGCATCTGATTGGCTGGCGTGGGTATGAAGCTTTTTGTAATATATAGTCACttactatattttttgcactataagacgcacttaaaatcctttaattttcctaaaaatcgacactgcaccttataatccggtgctccttatgtatgaatctatcagtcaggtattaaggagcagtaaatccactctgctgaagtacagagttatacaggagttttagtttagtttagcagTATTAGcttagccactaaccgcgctaagcgcttGCTAGCTATTTCGCCATTaagaggtgagtgttatcggACTGAAGGCTGCTGCtaatcccggctagcactgctggagcagcattagcattagctgctaactgcactaagcgctagctcgtTTGGCGTTCAGAGATAAGTATtaatcggcctgtagtctgctgctaaccccggctagcactgctggagcagcattaacattagccactaTCCGCGCCAACTGTTAGCTCTTTCGTTGTTCAGAAGTGAtaattattggcctgtagcctgctgctaaccctgaagaaatttgagaatctaagcttactgtacataaacgtgctttacttacccaggagagaaatctgtgtagattaacatctaatatatttttaagaattacagttttgtttacttagcttagctttacttaacttatttaaCCTTCCCCACCAGAGGAGAGaaatgctgaattagaaggaaaacatggtgacacccctgttccttactagtgtcgctttaAATGAGTCCTGagtatgaaaatagatgttttttgatagtgcaccttataacctgatgcgccttatagtgcaaaaaatacagtaatatgtttatgtatgtgaACAGATcaagattttaccaaatcagaGCTGAACAAAAATTGATTTTAACTGATTAATGAGGcctgtaatgtgaacgtagcctgaACTGCCAGTTAAGGAACGTAACACAGGGCAATTTAAGAGGCCGAATGTACTCCAGATTAACTGGCATGCactaaaattgagttttttAGTATGAATTTATGTAGAATTATGTTTATGATGCCCACATTTGCTGcaattctgtatttttctccACTACGGCACTCAACCACACTGAAGCTGATCCTACTGCTGTGCCGGGCAGCGAATACTATCATCCAACCTCCGCCTGGGGTTAGAATTACTGAGACCCTGTTACCGATAGGGTCCGATCACTGTGCCTCAACATCAGTCATCCATCATCAGTCATTCCCTTAACACTATAAActaaactatacacacacatacacacacacatacacacacatccattCACTCTAACACACTCTTCCTCTCCTTTCGTTCCATCTAGTTAACTTTCCTGCTGAGTTAAGTTAAAAACGTGTACTTTAGGCTTTGTAGTGATACATGCATCCATTATACTGAAGTACTtataatttcttaaaaaataaaagtaaaaaagaaaagaaaagaaaagaaaaaaacaaaacgaaacaaAAACAGGTATTAGAAACATAGCTATACAGAGTCTTTAGCAGTTCCAGGGAGCGAGGTTTGGAAGGATGCGCCCCATGTCCCGAAGTGATGCAGAGTTAGTTGGGAggtgaggtgtgtgttggtTAGTTGCTGCAGCACGGCCCTTTGGCAGGCTGGGCAGTCTCTGCAAGGTCCACTCCTCGGTTCCGGCCCGTGCTCGCTCCGGCAGGCTGTGGCTCGCTCTTGGGAAGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219267 True 3341 lncRNA 0.39 3 31555429 31559544

Neighbor

gene id symbol gene type direction distance location
znf385d znf385d,LOC107688204 coding upstream 40788 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 300121 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 571569 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 755205 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 883160 30661882 ~ 30672269 (+)
satb1 satb1,LOC107569796 coding downstream 128508 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 817557 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1122198 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1161700 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1222530 32782074 ~ 32879256 (+)
G161834 NA non-coding upstream 27232 31372977 ~ 31528197 (+)
G161835 NA non-coding upstream 37268 31375462 ~ 31518161 (+)
G161831 NA non-coding upstream 243626 31311531 ~ 31311803 (+)
G161826 NA non-coding upstream 308552 31246081 ~ 31246877 (+)
G161818 NA non-coding upstream 335246 31219338 ~ 31220183 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding downstream 11550 31571094 ~ 31573854 (+)
G162001 NA non-coding downstream 276682 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 312479 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 528799 32088343 ~ 32091024 (+)
G162025 NA non-coding downstream 635155 32194699 ~ 32194986 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 660923 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 677102 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1141217 30353686 ~ 30414212 (+)
G161331 NA other upstream 2438634 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2796422 28745696 ~ 28759007 (+)
efhb NA other downstream 25202 31584746 ~ 31605490 (+)
G162017 NA other downstream 509318 32068862 ~ 32148190 (+)
G162032 NA other downstream 676772 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1154639 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4248321 35807865 ~ 35814793 (+)

Expression


Co-expression Network