G161849 (rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780)


Basic Information

Item Value
gene id G161849
gene name rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31571094 ~ 31573854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219272
CCTGAAAGTCCAGTGCTCTCTTGTTTGCGAGGTCCGCCTTGTTCCCAGCCAAAGCTATTACGATATTGGGACTGGCTTGCCTCTGAAGCTCCTTCACCCAATTCTTTGCACGTGCAAACGATTCTTCGTTCGTGATGTCATACACCACTATGGCGGCCTGCGCTCCTCTGTAATACATGGGAGCCAAACTGTGGTAGCGTTCCTGACCAGCTGTGTCCCAGATCTCGAACTTCACTGTCGTGTCGTCCAAACATACTGTCTGAGTCAGGAATGCag

Function

symbol description
rab5ab Predicted to enable GTPase activity. Acts upstream of or within several processes, including Spemann organizer formation; epiboly involved in gastrulation with mouth forming second; and nodal signaling pathway. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
PREDICTED: ras-related protein Rab-5A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219272 True 276 lncRNA 0.51 2 31571094 31573854

Neighbor

gene id symbol gene type direction distance location
znf385d znf385d,LOC107688204 coding upstream 56453 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 315786 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 587234 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 770870 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 898825 30661882 ~ 30672269 (+)
satb1 satb1,LOC107569796 coding downstream 114198 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 803247 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1107888 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1147390 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1208220 32782074 ~ 32879256 (+)
G161847 NA non-coding upstream 11550 31555429 ~ 31559544 (+)
G161834 NA non-coding upstream 42897 31372977 ~ 31528197 (+)
G161835 NA non-coding upstream 52933 31375462 ~ 31518161 (+)
G161831 NA non-coding upstream 259291 31311531 ~ 31311803 (+)
G161826 NA non-coding upstream 324217 31246081 ~ 31246877 (+)
G162001 NA non-coding downstream 262372 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 298169 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 514489 32088343 ~ 32091024 (+)
G162025 NA non-coding downstream 620845 32194699 ~ 32194986 (+)
G162028 NA non-coding downstream 651150 32225004 ~ 32225495 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 676588 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 692767 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1156882 30353686 ~ 30414212 (+)
G161331 NA other upstream 2454299 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2812087 28745696 ~ 28759007 (+)
efhb NA other downstream 10892 31584746 ~ 31605490 (+)
G162017 NA other downstream 495008 32068862 ~ 32148190 (+)
G162032 NA other downstream 662462 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1140329 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4234011 35807865 ~ 35814793 (+)

Expression


Co-expression Network