efhb


Basic Information

Item Value
gene id efhb
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31584746 ~ 31605490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219274
CCCGCTGAAGACCCCCAGAACTCTCAGCAGATCCAGAGCAGAGCAGGAGCACTTCATCACCTCCTCTTCAGTCATCTCTGCCGTTGTGGGTGGTCTCACCACTACCGATTATCGTACGTATGGAGTTCCCACAGTGCGTCTGGATCTGCCCGCCCCTCAAATAAAGCGCGTCAGTGACCGCACGAACTACGGAGACGAGTCCACGGCGTATAACCTGCTGTTCCCCACAGTGCACTCGCGCTATGGCGTGCACGAGAAACACTTCTTCTCCCCTCGCACCAAAAACCAGATGGTGCAGATTTTCCAGAATGTCGGCCTGAATGTTTCTGAGCAGACGTTTGAGGAGGCCTGGAAGTTAGCATCCATTAGATCTCCCACTGGAGACGTCTGTGTGGAGAGCTTCCGGAACATTCTCAAAGAACTGCAGGCGAATTAAAGAGAACCTGTACTGCA
>XM_022679866.1
aatgtattatatatgtttttatgggATTTGTGATGTTGATGTGTTGGTATGTTGGGGGGGAGCAGTAAACTGAGACAGCAGGTTGTGTTGCCTGGTAACAGGGTGTAAACTCTGCTGCAGTGTCGGATGAGCACAGGCTGCGGCTGCTGTTGGTGCTGTTGGTGGTTCAGCTCCAGATATTTATTATAACTACAGAGTTTATAATGACTTTATTACAGAGGAAAAACAGCAGCTGGAGACGCAGAGACACATTCCCCACTATCAGAGCGgctGGTAAACTCATACCACTGGGAGACAGGGTACAGACATGCCTGCAGGAACTAACACCCCGGCCGGTCACACCTCCTATGGTTAAGAAATTTCTCAGCAGTAACCGTCCAGAGCCAGGAGCGATACGAGTTTTCGTCGGAAGAGCAAATGATCCGGACATTGCCAGCAGCCTGGTTCACGGAACAAGCACAAGATCATCCATCACTGCTGGATCTTTGGTCAACCCACTGCCCAAGACCCGCTATCAGGAGAAGCTGCGTGAGCTGCAGGAGGTCACGTACAACAGCAAACGCAAAGCTCCTCTCGAGAGAGCCTGTGTTAACGGTCCTGGGCTTCCAGAGTGGGTGGACCCTGAGAGAACAGCGTTCGGAGTTAAAACCAGTATCTCTTCTAACGGTGGTGAGATCATTAACCCCCCCAAAACAGCGGAGCAGGTGGAAAAGGAGGCACAGGAGGGTCATAAGCAGTACATTCGCTCACACAGCTCCTACTTTGTGGGTGAGCGTAAAGACAGAGGTTATGATCTGGGTACGTATCTGAGGGACAGCAGGTTTGGTGTGTCCACCCCTCATCGCAATGATGGACACAATGTCTCCAGGTCTCTGCAGTGGTTCTCAGACACTCAGATGAACCACAGTGCAAAACTCGTCTCCAAGCGATGTGACGACTTCAGAGAAAGGACCCAGCCGCAGATAGGCAAAGTTCTCGACCCGATTGCAGACACCTTGACTGTCCCAGCTGACCACACGTTTGGAATTTTGCTGCGTCCCGATGCATTTGGTGCAGGTGACCTCATCCACTCCACCCCTCCTTCAGAGCACCTGAGGGGGCAGGACAGGAGGCGGGCTCTGGTCAACGCTGTACGACAACACCTGAAGAAAGCCAACTTCCACAACTTCACATCTCTGCTGCAAGCCTTCAGACACTACGACAAGAAAGGTCAGGGGAAGATTGATAAGCAGGACCTGCAGGACGTGTGCAGACAGTTTAACCTGGACCTCAGTGGAGACGTGCTAGAGGGTCTCGTGGACTACTGTGATGTTGATAAGGACGGACTTATTAACTTCTTGGAATTTGCAAACTTTCTCAACTGGAAGGATAAAATGCCGATCCGTCCAGCAGAGCAGAGGATTTTAACAAGAGGTAGAtatttactaatagcccccaaaagcatggctagggccccaaaagcatggttagagcccccaaaagcatggctagagcccccaaaaaGCATAGCTATGGCCCTCAAAAGCATGGTTAGAGCCCCGCTGAAGACCCCCAGAACTCTCAGCAGATCCAGAGCAGAGCAGGAGCACTTCATCACCTCCTCTTCAGTCATCTCTGCCGTTGTGGGTGGTCTCACCACTACCGATTATCGTACGTATGGAGTTCCCACAGTGCGTCTGGATCTGCCCGCCCCTCAAATAAAGCGCGTCAGTGACCGCACGAACTACGGAGACGAGTCCACGGCGTATAACCTGCTGTTCCCCACAGTGCACTCGCGCTATGGCGTGCACGAGAAACACTTCTTCTCCCCTCGCACCAAAAACCAGATGGTGCAGATTTTCCAGAATGTCGGCCTGAATGTTTCTGAGCAGACGTTTGAGGAGGCCTGGAAGTTAGCATCCATTAGATCTCCCACTGGAGACGTCTGTGTGGAGAGCTTCCGGAACATTCTCAAAGAACTGCAGGCGAATTAAAGAGAACCTGTACTGCATGTA

Function

NR:

description
PREDICTED: EF-hand domain-containing family member B

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23929 EFHB; EF-hand domain-containing family member B

RNA

RNA id representative length rna type GC content exon number start site end site
TU219274 False 453 lncRNA 0.54 3 31603007 31605486
XM_022679866.1 True 1994 mRNA 0.51 13 31584746 31605490

Neighbor

gene id symbol gene type direction distance location
znf385d znf385d,LOC107688204 coding upstream 70105 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 329438 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 600886 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 784522 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 912477 30661882 ~ 30672269 (+)
satb1 satb1,LOC107569796 coding downstream 82562 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 771611 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1076252 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 1115754 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 1176584 32782074 ~ 32879256 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding upstream 10892 31571094 ~ 31573854 (+)
G161847 NA non-coding upstream 25202 31555429 ~ 31559544 (+)
G161834 NA non-coding upstream 56549 31372977 ~ 31528197 (+)
G161835 NA non-coding upstream 66585 31375462 ~ 31518161 (+)
G161831 NA non-coding upstream 272943 31311531 ~ 31311803 (+)
G162001 NA non-coding downstream 230736 31836226 ~ 31836672 (+)
G162003 NA non-coding downstream 266533 31872023 ~ 31872277 (+)
G162014 NA non-coding downstream 482853 32088343 ~ 32091024 (+)
G162025 NA non-coding downstream 589209 32194699 ~ 32194986 (+)
G162028 NA non-coding downstream 619514 32225004 ~ 32225495 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 690240 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 706419 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1170534 30353686 ~ 30414212 (+)
G161331 NA other upstream 2467951 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2825739 28745696 ~ 28759007 (+)
G162017 NA other downstream 463372 32068862 ~ 32148190 (+)
G162032 NA other downstream 630826 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1108693 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4202375 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 4506552 36112042 ~ 36120402 (+)

Expression


Co-expression Network