G161979


Basic Information

Item Value
gene id G161979
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31614092 ~ 31614569 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219459
TCAGGAGAGGTTTTAATAAACAGAGCCAAACCAACAAGCTTAAACTGAGTACTAACAACagtacaaaacacaaacaacacagaccaaaacatcagagccAAATCACAGTCCAAAAgggataaacaataaacaggaaATAAGGGTCTAAACCAGAACAAAACAGCCAAATGAACTAACCAAAAGGGCAAGACAAAATCAGAGACAAAAGCCAAAAAATAGGTCATACACGGAAATAGATAATCAAAGAAATAACGCTCGGTATGCAGCTGAATAACAGGGGCAATACTTCGCGAGAAACCGGACAAACAGACTTGTATTTATACATAGAAAACCCccagtaattactcagaacacaggtgaagcAGATCTAACAATcaggtgctgattggctggctgagaCACAGGATtgagaggtgcattctgggagttggagtttgtGAAGGTGGAAAAGTCAGTAGAAGCATTGGAAGGTGTGAca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219459 True 478 lncRNA 0.40 1 31614092 31614569

Neighbor

gene id symbol gene type direction distance location
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding downstream 31045 31559170 ~ 31583047 (-)
fam110d LOC108426366 coding downstream 546005 31030479 ~ 31068087 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 768455 30791792 ~ 30845637 (-)
LOC111194850 NA coding downstream 955647 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 973406 30635521 ~ 30640686 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 583016 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 708316 32322885 ~ 32342049 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 976327 32590896 ~ 32599250 (-)
LOC103041900 LOC103041900,LOC107592163,LOC103356858,LOC107688211 coding upstream 1000964 32615533 ~ 32651073 (-)
LOC103040777 LOC103040777,LOC108439298,LOC108256343,LOC107711540,LOC107671441 coding upstream 1088402 32702971 ~ 32719382 (-)
G161971 NA non-coding downstream 60266 31553049 ~ 31553826 (-)
G161954 NA non-coding downstream 278211 31335646 ~ 31335881 (-)
LOC111194815 NA non-coding downstream 369847 31240625 ~ 31244245 (-)
G161933 NA non-coding downstream 405595 31180632 ~ 31208497 (-)
LOC111194813 NA non-coding downstream 525742 31087590 ~ 31088350 (-)
G161982 NA non-coding upstream 4625 31619194 ~ 31619579 (-)
G161999 NA non-coding upstream 207165 31821734 ~ 31821989 (-)
G162000 NA non-coding upstream 221359 31835928 ~ 31836143 (-)
G162004 NA non-coding upstream 257244 31871813 ~ 31872590 (-)
G162012 NA non-coding upstream 379991 31994560 ~ 32000813 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 832384 30699170 ~ 30781708 (-)
G161711 NA other downstream 1288234 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 2672705 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 2961145 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 4035174 27429941 ~ 27578918 (-)
tap1 NA other upstream 1037399 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 2483359 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 2786094 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 4524334 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 4724811 36339380 ~ 36354701 (-)

Expression


Co-expression Network