G162004


Basic Information

Item Value
gene id G162004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31871813 ~ 31872590 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219488
aattgcaacacctcagaccgcaagaccctacagcggatagtgcggacagctgagaaaatcatcggagtctctcttccctccatcactgagatctacaccacacgctgcatccgcaaagccaccagcattgtggacgaccccacccatccctcacacggactcttcgctctgatgccgtccggcagaagatacaggagcatccgagcctccactactagactctgcaacagcttcatccaccaggcagtcagacttctcaacgcacagagacagaactgaacccccaccccacccaccactcacccaacacaacccccccccctttacacacacaaagaactgaacttcacccacacacacacacccagtcagcacacagaggctgacatgactttattcccttcagcaatatttgctgcactcttaaaaactataaactctacctcagtaactgctgtgattatatatgttctatatgttacagtatgtcacacatctctgcaccttatccccactatacactttattataccgtatcggtactgcactgtcctgtctttaaattgtctcgtcttttgtatttattgtattttttgttatttagtgttataattttataattttatgttgcactgtcgtcactcctgcactttatgttgtctattgcttgttgttctatgttgcaccatggttccggaggaacgtaatttcatcacactgtgtacctgtactcagatgtaatgacaataaaagcctcttgacttgacttgacttgact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219488 True 778 lncRNA 0.45 1 31871813 31872590

Neighbor

gene id symbol gene type direction distance location
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding downstream 288766 31559170 ~ 31583047 (-)
fam110d LOC108426366 coding downstream 803726 31030479 ~ 31068087 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 1026176 30791792 ~ 30845637 (-)
LOC111194850 NA coding downstream 1213368 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 1231127 30635521 ~ 30640686 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 324995 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 450295 32322885 ~ 32342049 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 718306 32590896 ~ 32599250 (-)
LOC103041900 LOC103041900,LOC107592163,LOC103356858,LOC107688211 coding upstream 742943 32615533 ~ 32651073 (-)
LOC103040777 LOC103040777,LOC108439298,LOC108256343,LOC107711540,LOC107671441 coding upstream 830381 32702971 ~ 32719382 (-)
G162000 NA non-coding downstream 35670 31835928 ~ 31836143 (-)
G161999 NA non-coding downstream 49824 31821734 ~ 31821989 (-)
G161982 NA non-coding downstream 252234 31619194 ~ 31619579 (-)
G161979 NA non-coding downstream 257244 31614092 ~ 31614569 (-)
G161971 NA non-coding downstream 317987 31553049 ~ 31553826 (-)
G162012 NA non-coding upstream 121970 31994560 ~ 32000813 (-)
G162125 NA non-coding upstream 196269 32068859 ~ 32148182 (-)
G162131 NA non-coding upstream 234084 32106674 ~ 32170863 (-)
G162129 NA non-coding upstream 295929 32168519 ~ 32170487 (-)
G162149 NA non-coding upstream 332094 32204684 ~ 32205050 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 1090105 30699170 ~ 30781708 (-)
G161711 NA other downstream 1545955 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 2930426 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 3218866 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 4292895 27429941 ~ 27578918 (-)
tap1 NA other upstream 779378 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 2225338 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 2528073 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 4266313 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 4466790 36339380 ~ 36354701 (-)

Expression


Co-expression Network