G162014


Basic Information

Item Value
gene id G162014
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32088343 ~ 32091024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219499
accctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctaaccttaaccttaacccttaatcaaccataaaatctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatctaaccctacacctaaccctaaccttaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219499 True 309 lncRNA 0.39 3 32088343 32091024

Neighbor

gene id symbol gene type direction distance location
satb1 satb1,LOC107569796 coding upstream 285780 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 573702 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 833035 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1104483 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 1288119 30798138 ~ 30800224 (+)
LOC107196951 NA coding downstream 286077 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 590718 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 630220 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 691050 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 814630 32905654 ~ 32915649 (+)
G162003 NA non-coding upstream 216066 31872023 ~ 31872277 (+)
G162001 NA non-coding upstream 251671 31836226 ~ 31836672 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding upstream 514489 31571094 ~ 31573854 (+)
G161847 NA non-coding upstream 528799 31555429 ~ 31559544 (+)
G161834 NA non-coding upstream 560146 31372977 ~ 31528197 (+)
G162025 NA non-coding downstream 103675 32194699 ~ 32194986 (+)
G162028 NA non-coding downstream 133980 32225004 ~ 32225495 (+)
G162036 NA non-coding downstream 231860 32322884 ~ 32368130 (+)
G162052 NA non-coding downstream 239165 32330189 ~ 32333504 (+)
G162054 NA non-coding downstream 243483 32334507 ~ 32335028 (+)
efhb NA other upstream 482853 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1193837 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 1210016 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1674131 30353686 ~ 30414212 (+)
G161331 NA other upstream 2971548 29070820 ~ 29116795 (+)
G162032 NA other downstream 145292 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 623159 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3716841 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 4021018 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 4041391 36132415 ~ 36169745 (+)

Expression


Co-expression Network