G162017


Basic Information

Item Value
gene id G162017
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32068862 ~ 32148190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219503
gcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattacaatacacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagacccacggtatccagggtaatgtcagcacaccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgcccaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219503 True 391 TUCP 0.46 2 32068862 32148190

Neighbor

gene id symbol gene type direction distance location
satb1 satb1,LOC107569796 coding upstream 266299 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 554221 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 813554 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1085002 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 1268638 30798138 ~ 30800224 (+)
LOC107196951 NA coding downstream 228911 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 533552 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 573054 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 633884 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 757464 32905654 ~ 32915649 (+)
G162003 NA non-coding upstream 196585 31872023 ~ 31872277 (+)
G162001 NA non-coding upstream 232190 31836226 ~ 31836672 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding upstream 495008 31571094 ~ 31573854 (+)
G161847 NA non-coding upstream 509318 31555429 ~ 31559544 (+)
G161834 NA non-coding upstream 540665 31372977 ~ 31528197 (+)
G162025 NA non-coding downstream 46509 32194699 ~ 32194986 (+)
G162028 NA non-coding downstream 76814 32225004 ~ 32225495 (+)
G162036 NA non-coding downstream 174694 32322884 ~ 32368130 (+)
G162052 NA non-coding downstream 181999 32330189 ~ 32333504 (+)
G162054 NA non-coding downstream 186317 32334507 ~ 32335028 (+)
efhb NA other upstream 463372 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1174356 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 1190535 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1654650 30353686 ~ 30414212 (+)
G161331 NA other upstream 2952067 29070820 ~ 29116795 (+)
G162032 NA other downstream 88126 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 565993 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3659675 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3963852 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3984225 36132415 ~ 36169745 (+)

Expression


Co-expression Network