G162028


Basic Information

Item Value
gene id G162028
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32225004 ~ 32225495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219515
cttctggattcttgtcgagccagtatcagatggtagtggttgctgtgttctgctcacgcaacttataatgtgatttattgtgtgtgattgtgcttaggtaagtgtgttgttgccatagttaaaggaagtgagcttagattaaggagggattctgtttgttcataggttatttttttggtaggtctgttacttggcagttgaggcaatggaccatgaacatagtgttaggctgtgcttctggattcttgtcgagcca
>TU219516
cttctggattcttgtcgagccagtatcagatggtagtggttgctgtgttctgctcacgcaacttataatgtgatttattgtgtgtgattgtgcttaggtaagtgtgttgttgccatagttaaaggaagtgagcttagattaaggagggattctgtttgttcataggttatttttttggtaggtctgttacttggcagttgaggcaatggaccatgaacatagtgttaggctgtgcttctggattcttgtcgagcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219515 True 256 lncRNA 0.42 2 32225004 32225495
TU219516 False 256 lncRNA 0.42 2 32225004 32225495

Neighbor

gene id symbol gene type direction distance location
satb1 satb1,LOC107569796 coding upstream 422441 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 710363 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 969696 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1241144 30971172 ~ 30983860 (+)
LOC111194808 LOC102215143 coding upstream 1424780 30798138 ~ 30800224 (+)
LOC107196951 NA coding downstream 151606 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 456247 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 495749 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 556579 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 680159 32905654 ~ 32915649 (+)
G162025 NA non-coding upstream 30018 32194699 ~ 32194986 (+)
G162014 NA non-coding upstream 133980 32088343 ~ 32091024 (+)
G162003 NA non-coding upstream 352727 31872023 ~ 31872277 (+)
G162001 NA non-coding upstream 388332 31836226 ~ 31836672 (+)
G161849 rab5a,rab5ab,LOC103038585,LOC105891911,LOC104931780 non-coding upstream 651150 31571094 ~ 31573854 (+)
G162036 NA non-coding downstream 97389 32322884 ~ 32368130 (+)
G162052 NA non-coding downstream 104694 32330189 ~ 32333504 (+)
G162054 NA non-coding downstream 109012 32334507 ~ 32335028 (+)
G162044 NA non-coding downstream 345057 32570552 ~ 32576305 (+)
G162043 NA non-coding downstream 351775 32577270 ~ 32579768 (+)
G162017 NA other upstream 76814 32068862 ~ 32148190 (+)
efhb NA other upstream 619514 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1330498 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 1346677 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 1810792 30353686 ~ 30414212 (+)
G162032 NA other downstream 10821 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 488688 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3582370 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3886547 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3906920 36132415 ~ 36169745 (+)

Expression


Co-expression Network