G162044


Basic Information

Item Value
gene id G162044
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32570552 ~ 32576305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219534
tGTCCAAAtcttggcctgtactgtatgagAAGATGACTTGTAGTAGACTTGTAGGCTCTGTAGAGGGACACCTGGTGTCCTCGTCAGGTCAACAGGCTCCATCTGTAGGGCGCGGAGGCCTCGGCTTGACCTCGTTTGCTGGCGGCTACAGAAGACTTGAATTTCTCGCTCAAATGAGACAGAAAAACAAGGGTGTGAAAGGCGGCGTGAAGGGATCTGCTGCTTCGTCTGCTGAGTAACACTTAGTAACCTTTAGCGGGCACTCGCAACCGGCGAGACAATCCGCGGCTAATGGAGCTCTCTGCCTCTTTCGAGAGCGTCCGCTCACCTCGTACGCAGCTAATGTGCGCTTTGCTCCTTTTGCCTAACCTTTTCATGCGTCAGAAACTCCGGCAGCAAAGAGAAAGCGAGCTTATTACCTGTAGTAACACGCAGTTCCTTCGGTTCATTCcttgttctctttctttccaagtGGCGGAACCACTGGAACCACTGGAGGGGCTGTGCGTGATTATTATGTACTGAAGTTTTTCcgttcgtttgtttgtttgtttgtttctttatttgtttctttctttctgctggTGAAGTACAAATGATGTTGTATATTTGAAAACATTTTCAAACTCTGGCGCCACTTTGGCCATCGCTTCTTTGATTGTCGTTCATTATCACAGACATTTGTAAGACATTATCTCCTGTTCGTTTGGATTAGTCAAATGCGGTGCAGTCCAGAAGTAACCGGACAGTGAtttatctgtgtttgtgttgttttggcTCTGTGCTTTAGGGTAATGGATATTACATGAAACATATGGGAAAAAATAGTTCAGCTTTAATTCAGTGTAGAACATATCGTCAATCTCAATTTTGTCAATTTaagtacataatttaaacagataaaCTCTCCCTTATACTGTGCACAAAATTTCTTCatgaaaggaccaatagaaatacttttcGTTTCAAAAGGACCTGAAATaacctctttttacattgacttccattgaaagtttagaaggttttttctctctcctgtaaagttgtacTGCAACAATTCAATTATAGACCATTTCCATTATCACACAGGTCTTATATGATCTTGGGAAAATGTTGGAAAGGTGTGGACATTATCTGAAGTTATACTTTTACACAAATAGTGTGCAGCTAAAGAGTTTTATGTTTCTGGAAAATTACCTGCTCTGTTCACCAATAGGCTCACTAGAACATTACCCAGTCTTTAAGACTTTGAGACTTTGCACTAGAGGGGTGTCAGGATAAAGTCCAGGTAATGTCCAGGACCCATTGTTAACACATTCAGCTCCTTTGGGTAATGTCCGGAAACGTTTTGGGCcctattatataataaatcagttttatttgttCCAAAATGCAATATTGTCcctcatttttttatcattaggTTTTTATGTTGCTTTTCTGTCTTTATATCTGAAATCTATTTGAAGCCCTACTTTCACAATGCTGTCCGTGTTTTCTTGGGTAACCTGATACTTGTCGGGATAGACCACGTAACACCGTAgagaatatacagtaaaatcagagaccaagctttaaaaataaggtttttaaaaaaataagaggccacttaaaaatgatgagtttctttcatttaaccaaattaaaaacctctggaatataatcaagaggaagatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaagggcataaagttatccaaaagcagtgtgtaagactggtggaggtaaaactgtgattaaaaaccagggttattccaccaaattctttctgaactcttaaaactgtatgaatatgaacttgttttctttgcattatttgaggtctgaaagtttctgaatcagagaaactgattcagaaactgaagtggtctcttcgttttttccagagctgtttatatatatatatgcctgaGACAGAACTCAGCGAGACAGTCTGagtgtgttatatatttttcaatgAGTGTGAGCCAAGCAGAGGTAGATACATTCTGAATTCTGCCTTCCCAGATAGTAACACGGACTGAATACAAATTCTTTATGTCTTCAGTGTGAGAATGTGCTCCCGGTATCCCATTACACCCCAGGCCTGCCAAGAATAATATTCTGGACAGGGGTTTCAAAAAGATCTTTTCAGAGCAAATATTGTTCACTCTGAGCTCACAACTGAAATCTGATCATAGAAACATGAGTCGAATGTTAcgatatatggacaaaagtattgggacacctacttcagtccacttcagtttctaaatcagtttctctgattttgctatttataggtttatgtttaagtaaaatcaacattgttgttttattctataaactacggacaacatttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219534 True 2394 lncRNA 0.39 3 32570552 32576305

Neighbor

gene id symbol gene type direction distance location
LOC107196951 NA coding upstream 4662 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 767989 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1055911 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 1315244 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1586692 30971172 ~ 30983860 (+)
LOC103041596 LOC108439295 coding downstream 105437 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 144939 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 205769 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 329349 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 341838 32918143 ~ 33043136 (+)
G162036 NA non-coding upstream 202422 32322884 ~ 32368130 (+)
G162054 NA non-coding upstream 235524 32334507 ~ 32335028 (+)
G162052 NA non-coding upstream 237048 32330189 ~ 32333504 (+)
G162028 NA non-coding upstream 345057 32225004 ~ 32225495 (+)
G162025 NA non-coding upstream 375566 32194699 ~ 32194986 (+)
G162043 NA non-coding downstream 965 32577270 ~ 32579768 (+)
G162046 NA non-coding downstream 37413 32613718 ~ 32615469 (+)
G162087 NA non-coding downstream 57666 32633971 ~ 32635489 (+)
G162097 NA non-coding downstream 71854 32648159 ~ 32747711 (+)
G162099 NA non-coding downstream 75721 32652026 ~ 32655165 (+)
G162032 NA other upstream 275523 32236316 ~ 32295029 (+)
G162017 NA other upstream 422362 32068862 ~ 32148190 (+)
efhb NA other upstream 965062 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1676046 30854558 ~ 30894506 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 137878 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3231560 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3535737 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3556110 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4177880 36754185 ~ 36754687 (+)

Expression


Co-expression Network