G162087


Basic Information

Item Value
gene id G162087
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32633971 ~ 32635489 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219582
atctctgaacagtgaaaaagctagctagctaagcggttagcatctagctaatgctatttattgctgctccagcctcggagctgcacggctctggactctgtatagcactgaaactctctataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggtactttatgttgcacccattgctgtaCAATTAGCTTGTATTGTCTCTAAAGAGAATAGGATTAATGGAGCTGAGAAACACTAACCTACTGTCACTATGCCTAGTAACAATTCTAAGCTATAGAGGGTCTTTACAGTCAAATGGCCTTTTTCTCACAACAGCAGCTTTTGCTGTTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219582 True 444 lncRNA 0.41 2 32633971 32635489

Neighbor

gene id symbol gene type direction distance location
LOC107196951 NA coding upstream 68081 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 831408 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1119330 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 1378663 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1650111 30971172 ~ 30983860 (+)
LOC103041596 LOC108439295 coding downstream 46253 32681742 ~ 32701604 (+)
LOC103041297 LOC103041297 coding downstream 85755 32721244 ~ 32729851 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 146585 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 270165 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 282654 32918143 ~ 33043136 (+)
G162046 NA non-coding upstream 18502 32613718 ~ 32615469 (+)
G162043 NA non-coding upstream 54203 32577270 ~ 32579768 (+)
G162044 NA non-coding upstream 57666 32570552 ~ 32576305 (+)
G162036 NA non-coding upstream 265841 32322884 ~ 32368130 (+)
G162097 NA non-coding downstream 12670 32648159 ~ 32747711 (+)
G162099 NA non-coding downstream 16537 32652026 ~ 32655165 (+)
G162107 NA non-coding downstream 42862 32678351 ~ 32687544 (+)
G162111 NA non-coding downstream 100940 32736429 ~ 32739609 (+)
LOC107196950 NA non-coding downstream 106498 32741987 ~ 32744007 (+)
G162032 NA other upstream 338942 32236316 ~ 32295029 (+)
G162017 NA other upstream 485781 32068862 ~ 32148190 (+)
efhb NA other upstream 1028481 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1739465 30854558 ~ 30894506 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 78694 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3172376 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3476553 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3496926 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4118696 36754185 ~ 36754687 (+)

Expression


Co-expression Network