LOC107196950


Basic Information

Item Value
gene id LOC107196950
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32741987 ~ 32744007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219592
gtgattggctgctgcttctgtgtgtgttggttgagTGTTGActgaaatgtgatttattgtaaaACATTCTAATTAAGTGTAACTCTCTCTCAGGCTCAGGGTCGTCTGGAGGAGCAGCGCAGTGTGGCCCCGGGCCCTATGGATGATGAAGATTTCTTCTCCTTGTTGCTGAAGGTTCAGGGGGGGCGTATGGACGAGCAGAGGACGGAGATGCCTGTAGCACTTAAGTATTGAGAGCGGCGGTGGCTAACACTGTTCAGTAGGACACAGGGGTTTTGTTTCAGCTCTACGTGTCCAAGAAATGTGGCCTTTGTTACCTTTTTAggtctatttttgtatttgtagtaCCGTAACTGTGGCTGGGGCTCGTCTGCAGAAGTACgatatactgacatgccaaaaatcatgggacaggaaTTAGTATCATGTTTTATTGAAGCTTAAGCTTAAGCCACACTGACTGACCTGCtggatacagtatgtgtgtgggaCAATtcggacaattctagccagaagaaGCCGCTCACGATTATTAGGAACCACTGCCCTGTCCACTcaTGGCTGCTAAAAAAACCAACTTGCATgtgcatcctgcctccaactCTGGAACGTTACACATATTATTGCcagtaaacatgtaacactgTGTgctgagaaatgttaaatgcctgcaaAAAGGCCTTGCTTGCGGATAATCAATGTACTTAttactgtcccatgactttttccttttttgcatgtcagtgttaattaatattGATGGTTCTTTGCCTGTAACTTTTTTGTATATTGCACCGTAAATTTCcaaggaacctttt
>XR_001518293.2
TCTAATTAAGTGTAACTCTCTCTCAGGCTCAGGGTCGTCTGGAGGAGCAGCGCAGTGTGGCCCCGGGCCCTATGGATGATGAAGATTTCTTCTCCTTGTTGCTGAAGGTTCAGGGGGGGCGTATGGACGAGCAGAGGACGGAGATGCCTGTAGCACTTAAGTATTGAGAGCGGCGGTGGCTAACACTGTTCAGTAGGACACAGGGGTTTTGTTTCAGCTCTACGTGTCCAAGAAATGTGGCCTTTGTTACCTTTTTAggtctatttttgtatttgtagtaCCGTAACTGTGGCTGGGGCTCGTCTGCAGAAGTACgatatactgacatgccaaaaatcatgggacaggaaTTAGTATCATGTTTTATTGAAGCTTAAGCTTAAGCCACACTGACTGACCTGCtggatacagtatgtgtgtgggaCAATtcggacaattctagccagaagaaGCCGCTCACGATTATTAGGAACCACTGCCCTGTCCACTGTGAGGGGTAATATTGGCTTTCTATGACATATTGTTACACCTTAGACCATGTTTGTCGTTTTATTCCTTCTTTTCTTGTCCttttctgttcctgtcttgtGCTTTTGCTTGTCTTCCCTAGTCTAATTAGTGTTCCCacctgtgtctaatttgtaaccCAGCCTCCTCATTAACTACCCCACGTGTTCCTTGTCTGTGTGTATTAGGGATGCAATGGTTCTCTGTTTTTTATCGAACCGTTCGGTTCGGCCTGTTCGGTTCGATGTATGTTGAAGCtagataatataaatatatataaaaaccgAACCGAAACCGTGGCCCAAGAACcacaatattttcatatttcatgTTTTCCTTTGTTATTTGTTGCCCCTTTTTGACCAGCTTGGAACCGACACCATTCTGGTTCCGAAACCAGGAACCGTGACCACTTCTGTTGACCGCCTCTGTGCAGTGCTATCTTTTGATGATGATATGATGAGGGGTTTTGACGGTTCCACTACAaatgtgtctcatttgtaacccagTCTCCTtgttatcttccccaggtgttccttgtctgtgtctgtgtttttatacctcatgttttcctttgttctctgttgcCCCTTTTCCACCAACGTTCTGGTTCataaacctaattttgaaccggttTGCTGCGTTTCAATCAAAAAACTAGGTTCCAAAACCAGGAGCATTTGTTCTTTCAGTGGAAAAGCTCTATGTCTTGCTTTTTGACTTTTTgctatatttctgtttttttttctgttatctgTACCgtatctgttttgttttatgtatttattagtcTATAGTTTTGTCTACCTAGTCCTAACTTGTTTGATTTTTAGTCTTTCtatgttttgtttctttgtttttagcaTGGCTGCTAAAAAAACCAACTTGCATgtgcatcctgcctccaactCTGGAACGTTACACATATTATTGCcagtaaacatgtaacactgTGTgctgagaaatgttaaatgcctgcaaAAAGGCCTTGCTTGCGGATAATCAATGTACTTAttactgtcccatgactttttccttttttgcatgtcagtgttaattaatattGATGGTTCTTTGCCTGTAACTTTTTTGTATATTGCACCGTAAATTTCcaaggaaccttttttttaagactgTATAGAACCCTTTTTTTGCTGAAAGTGTTGAAGATAAACAGATACACAGTTAAACTAGATGaagctgaagttttttttttttgttaatttcttTCTGTGCTCATCGTCCCAAGGTCTTAAAATATTGAAGATCTATTTAAGTAGAAGGTCATTTTTAGTGCAAATATGAGCATTTTAACACAAGTGGTACGCATGCTATTCTTTtctgtacaaaaaaatgttatttcattATATGGTACATTGCTTTTGTCATGTGTCA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU219592 False 818 lncRNA 0.44 2 32741987 32743737
XR_001518293.2 True 1902 lncRNA 0.40 2 32742054 32744007

Neighbor

gene id symbol gene type direction distance location
LOC103041297 LOC103041297 coding upstream 12136 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 40383 32681742 ~ 32701604 (+)
LOC107196951 NA coding upstream 176097 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 939424 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1227346 31381217 ~ 31514641 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 38067 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 161647 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 174136 32918143 ~ 33043136 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 460700 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1327152 34071159 ~ 34092737 (+)
G162111 NA non-coding upstream 2378 32736429 ~ 32739609 (+)
G162107 NA non-coding upstream 54443 32678351 ~ 32687544 (+)
G162099 NA non-coding upstream 86822 32652026 ~ 32655165 (+)
G162087 NA non-coding upstream 106498 32633971 ~ 32635489 (+)
G162046 NA non-coding upstream 126518 32613718 ~ 32615469 (+)
G162239 NA non-coding downstream 423710 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 432123 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 452958 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 509398 33253405 ~ 33253768 (+)
G162269 NA non-coding downstream 737341 33481348 ~ 33483410 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 22712 32714183 ~ 32719275 (+)
G162032 NA other upstream 446958 32236316 ~ 32295029 (+)
G162017 NA other upstream 593797 32068862 ~ 32148190 (+)
efhb NA other upstream 1136497 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 1863660 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3063858 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3368035 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3388408 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4010178 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4543160 37287167 ~ 37352779 (+)

Expression


Co-expression Network