G162097


Basic Information

Item Value
gene id G162097
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32648159 ~ 32747711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219594
AGTTTAAATCACTTAAAAACgaggtgaaaattctaagtgAGACTAATTAAGGTCAATCTAACACTTATAACGCCTATAAGATGCACTGGCTTGACATGACTAAGATTCTGAGTTCTGAGTTCATGTGCTGTGTTCACATATGCACTTTAGATGCTAAAATGATCCAAAACTATGTGAAAATGCAGTAAACATAGCTCATTTTCAATTTTCAGTAGGTGTTTATTGCTCATTGATGACAATAACatttaatagtattattattattaatatgataAGTGATTCCAGTAGATAACAGTCGAGTACAGGCCAGATAATTGCAGTTACACTGGAGGACAGACTGCATACTACAAGCTGAGCGATTGCATAATCTGTGTTTTGAGCCGCTGCACGCAGAATAACAGGAAATGCATGGGCAGCCAGCgtttgatgttttatttaatcgCACTGTCGAAGCAGATGGTTCTCCCAACAGAAACTGTCCAGGAGCCAAAGCCTGCGGGCCCCAGATTCAGCAGCCCTACTTTAGCATAGCGCTACAGTGCTCCTTATACCACAAGACCTGGTTTTGCTTCCCCCTGTGGGGCAAAACTTCACCCCCTTCACACAGTTCACACACTTCACAGAGAGCGTGCCCACCGAAAGATCGGTTATCATCAACTGTAGACAGATAAACATCTGCCATTCTGACCGCAGAAGGGGGTTTCTGAAATGGTAAATACAGTCATCATCAAAATATAGTTGCACCAGAAGGAAGTGTTGTGTTTCAATGATATTTGGTCGGAAGGTGAGGGTTTACAGACAATAAATGCTAAACAATAAAtgctaaaaagaaaaagaatttagactgatatgggaaATATTTATTGAGCAACAGACGTCAGATGTCTCAGTATGGagtgagttgtagaggttcctaatggagtcctgtgataatctGTCCCATTTAGAAGTGGATAGAGTGTTGATAAAGCAGTCTAATAGCAGCATCCCTCAAATTTTTAATCAGAAATAGGTCTGATAGCAGGACATGGCCATGTAAAGGTGTCTTCAAAGCAAACAAGCTCTTCAGATAGCAGCAGGAAGTGGATGAGCAGTGTCCTGTTGGAACAGCTggagtgtgcattcagaaaagctAGGGACTGATTGTTGAAGCTCATTAATGAAATGATTGATTAGTCGTCAAAAACCTTACGAAATTGCACCCAACACCATaacaccaggccttctggacgTGTGTAATCTTTTAAGTAAGTAAGCATTTTCTCCTAGACAAAAGCGTAACTCGTCACTGAAGAGATGACCCTAAGAGTCACAACATGGCACAATATCATTGCAGTGTTTGGTGACATTGTCCTGCATCATGCAGCCGTCGGCCAGTAGTGCTGGCACTAACAAAATGAATCATTGAAGGCATCATTGCTCACTAAATTTCCTCAATCATGATGTATAGGCCTTTCTTCTATCTTCAGGGTCACCAATAGTGTGCTAGGATTATGGTTAGGCCCTAGTTCAATGATCCAACTCTTCTGAAACCCTTTCATCTGCTGGAATTGCTTTTAAACTCTTCTTCGAGGCTTTGTGCTTTGTTTATACAGCTGGACCACCTTAAATAGCCAGTCAGGTACATGATAAGCCCCTCCTTACTTATATCACATGCAAGGCTAAGCACATAACCTGAATTGTTTGCTATTATCTTCCAATATCAGACCAAATCACCAAGTTTCTTTCCTTTCAGTTAatttcttctgggtgcaactgtGTTTTGAGGATGATTGTATATAGACCATGTCTGTTTTAATTGAATTCAAAGCTAAGCATTATGTCTAGCATCCTGTGTACATTTGTGGTAAATGATCTTAatacgttttaaaaaattatattttatattctgccCATCTTTGGTTGCCGTATTGAGAAAAGCCAGCTAAACAAAGCTTTTCTAATTGCTATTTTTCCTCCTTTCTTATTATGTAAAGCCGAGTACCAAACTTGTGATCTTGTGTAAACTGTGTACTATTTACTTCCAGTTAATATTGTACCcatggtttaaaaatgtgaattccTTGTATATCTACTTGTGAATAACTGTAGTAAAAATACTTGCACTACTTCACAGTGTTGCCAAGTCTGATGAGCTTAAATAATGCGAACAGCTTTCCTAACTTGCTTGAATTTTTCTTAGAATGCAAAAAGCATCATTCCattcactgtaattacactcacCCTCTGGCAGTatttaatgcaacaaaaaacacaacttcacattgttttattaatgtaacaaaagtgttaaaaaaattaaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219594 True 2306 lncRNA 0.38 3 32648159 32747711

Neighbor

gene id symbol gene type direction distance location
LOC107196951 NA coding upstream 82269 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 845596 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1133518 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 1392851 31164038 ~ 31255308 (+)
LOC103039032 NA coding upstream 1664299 30971172 ~ 30983860 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 34363 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 157943 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 170432 32918143 ~ 33043136 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 456996 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1323448 34071159 ~ 34092737 (+)
G162087 NA non-coding upstream 12670 32633971 ~ 32635489 (+)
G162046 NA non-coding upstream 32690 32613718 ~ 32615469 (+)
G162043 NA non-coding upstream 68391 32577270 ~ 32579768 (+)
G162044 NA non-coding upstream 71854 32570552 ~ 32576305 (+)
G162054 NA non-coding upstream 313131 32334507 ~ 32335028 (+)
G162239 NA non-coding downstream 420006 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 428419 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 449254 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 505694 33253405 ~ 33253768 (+)
G162269 NA non-coding downstream 733637 33481348 ~ 33483410 (+)
G162032 NA other upstream 353130 32236316 ~ 32295029 (+)
G162017 NA other upstream 499969 32068862 ~ 32148190 (+)
efhb NA other upstream 1042669 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1753653 30854558 ~ 30894506 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3060154 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3364331 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3384704 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4006474 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4539456 37287167 ~ 37352779 (+)

Expression


Co-expression Network