CI01000012_10852509_10860759


Basic Information

Item Value
gene id CI01000012_10852509_10860759
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10849984 ~ 10860868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10852509_10860759.mRNA
ATATATAAAGTGGTCAGCCTTGAGATCAATGGAAACAAGTCAGTTCAGTGCAGTCATTTTATTCTCCGATGCACTTCAAAAACACTTCAAAACTAGTGCTTGTTTACTTTTGTTGTGTAGTTTGTCCTAGAACGTGCATTGAAATGTGAAAATCTCTTTAGGAAGTTACTGGTCCAATCAGGTCAGAGTAATAAAAATTTTAAAACCGTTATCATAATGTCTCAAGTCTTTACCCTCACATTGAAACACTGCTGCAAAAACATGTGGTGTTTGTCTGCGTATTTGTATTTTGTTCATTAGCACACATCTCTTGAAGTGTGAGTGTGTGCATATTTGTGCTCAGCTGTGTTTGTGTGTACGTCTGTGTATGTGCTCACACAAATAGTATGTGTGTATGTGGGTATTGCTTGCATTGCTGACTGTTGCTCCCAGAGGCTGACGTGAGCTGGTTGGAGGCCAGAAGAGCACTGAGGTCTCAGAGCAGCTGTGAGGTTAGAGAACTTGTCATAATCAAAAAGTAGAAAGTTATGCGTTGCTGGCCCTGAAACGAGCCAGCGATGAAGACGGAAAAACATAGGGCTATAAATTGTTTGCCATCATTAACATTCTTGGTAACTAATTATATTATTGTTGATTTATGGCTTATTGAATAATCGTCTTATTCAAACCCACTGACTTTAGAGAGAGCGAGAGAGAGAGAGATCTTCTAAAACTGTTCTGGGGTTTAGCATTTCAATCTGGAATATTTGTTTTATTTGTTGAAAGATTAAAGTTGGAAGTCTTAAAAAGATTTATACTTTTTTGGATTTGATTCCAGTACATGCACTGAAAAAAACAGCTTTATCAGTATTTGTGTTTTGTTGTCCACTACAAATTTCATATATATATGAGATCATACAAAATGCATGTTATTTTTTATTTAGTACTGTCCTGAGTAAAGTAAGATGTTTACATATAATCCATAAGACAAAAAAAATAGCTGAATTTATTAAAATGACCCAGTTCAAAAGTTTGTGAACCATTAATTCTTAATACTGTGTGTCATTACCTGGATGATCTACGACTGTTTTTATGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAAATATCCAGGTCCCAAAAATTCTTCAGTTTTCCACCATCTTTTGCATATTTGAACCCTTTACAGCAGTGACTGAATGATTTTGAGATCCATCTTTTCACACTGAGGACAATTGAGGGACTCAAACACAACTATTAAAAAAGGTTCAAACATTCACTGATGCTTCAGAAGGAAACACAATGCATTAAGAGTCGGGGGGTGAAAACTTTTGAACAGGATGAAGAGGTCCAAATTTTTCTTATTTCGCTTGAATATCATTTTTTTTTTCATTTAGTAATGCCCTTCGGAAGCAACAGAAAATACTTGCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTTTCACCCTCCATCTATTAATGCATCATGTTTTTTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAAAAGTTGTGTTTGAGTCCCTCAGTTGTCCTCAGTAAAGCCCGCAAACAGTTTGCTGAAGACAAGCAGACTACGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCAGCAACCAGGTGAGGAGTACAAAGACAAGTGTGTTTTGCCTACAGTCAAGCATGGTGGTGGTAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATACAATTCATTGAATGCCAACAGAGCATGATCCCCTCCCTTCAGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACTTCCAGGACGACCACTGCCTTGCTAAAGAAGCTGAGGGTAAAGGTGATGGACTGGCCAAGCATGTCTCCAGACCTAAACCCTATTGAGCATCTGTAGGGCATCCTCAAACGGAAGGTGGAGGAGCGCAAGGTCTCTAACATCCACCAGCTCTGTGATGTCGTCATGGAGGAGTGGAAGAGGACTCCAGTGGCAACCTGTGAAGCTCTGGTGAACTCCATGCCCAAGAGGGTTAAGGCAGTGCTGGAAAATAATGGTGGCCACACAAAATATTGCCAGCGGTTTAGACATTAATAGTGTTGAGTTATTTTGAGGGGACAGCAAATTTACACTGTTATACAAGCTGTGCACTTACTACTTTACATTGTAGCAGTGTCATTTCTTCAGTGTTGTCACATGAAAAGATGAAAATAAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCTGTGAGATACTGTATATATATCAGTTTTGCTTCTCATTCTGTTTTTTTAAGGATTGTTGGATATTTGTTTTACTGAAAAAGACAAAAATAAAAGTTTGTTTTGCAGGGTGTACTGCATGAATTATGCACTAGTAGACAGACACAGAACATGTCGTCTGTCCCTAAACTGCTCCTATGGGTTTTTGGCTATGTAAAAAGAAATGTTATGAAGTCACATGACAAAAATACAACTTATGGCTGGCCAGCATGGTGGGTCATTCTCGGTACATTCTATGGTCATCACATTGCTACCATACAGCTGCATTTACCTCTTAATCAAGATGATGACAGGCTGAGGAAACGAGTAGAAGCAACTTACAATTCAGACATTTATGTGTTTACAAACCCAGTGCATTCCTTGAAGAACATGTACCCTCACTTTGCCCCTGCACATTTGACCTCTCTTCCGGTCCATACAGCTGGATGTGAGCATCTACAAGCTCTGTTTCGGTTGCTTGGCCAGTTCCTGTGTCAGTACGAGGAGCCCAGGGCTGAGGAGGAGGAGTGTGTGATCATGTCCAGGCGTCCAGACACTTGTATGAGGATGGATGGGACAGCTCAATGGAAGCCAGACACGAGACTACAGAGATTCCATTACGTAGTGCATGTGTCTCTCAACACAACAACACAAGAGCCGGCAGCCTCTGCACACTCAAACAAACCTGAGCCTCCTCGCTCCAGTATATACACATTGAGACATCAGACTCTCTGCACTATATCTCAACATCAGAGCCGGGCCAAAACACTAGCTTTACACCTGCATACACTCTGACATTATATAGAGCAACTACAGCACTTCTAAACGCAGTCATAATAGAGCTTTTTGCTTTGCTTTTAAAGTAGATAATGTGCCCACGTTGTACTTTGGAATTGAATAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10852509_10860759.mRNA True 3297 mRNA 0.40 5 10849984 10860868

Neighbor

gene id symbol gene type direction distance location
CI01000012_10714254_10788932 NA coding upstream 61052 10714254 ~ 10788932 (+)
CI01000012_10661067_10678624 OGFRL1 coding upstream 170568 10660689 ~ 10679416 (+)
CI01000012_10608607_10619833 NA coding upstream 229526 10608607 ~ 10620458 (+)
CI01000012_10572910_10604787 NA coding upstream 244704 10572830 ~ 10605280 (+)
CI01000012_10502102_10533782 NA coding upstream 316042 10502102 ~ 10533942 (+)
CI01000012_10892631_10918617 KCNQ5 coding downstream 31763 10892631 ~ 10918617 (+)
CI01000012_10922409_10930704 DDX43 coding downstream 61541 10922409 ~ 10931285 (+)
CI01000012_11011437_11013922 NA coding downstream 150496 11011364 ~ 11013931 (+)
CI01000012_11043669_11044569 NA coding downstream 182759 11043394 ~ 11044670 (+)
CI01000012_11091957_11093675 CCDC85A coding downstream 231089 11091957 ~ 11093774 (+)
G75477 NA non-coding upstream 53330 10796419 ~ 10796654 (+)
G75474 NA non-coding upstream 145612 10704151 ~ 10704372 (+)
G75470 NA non-coding upstream 162510 10687242 ~ 10687474 (+)
G75469 NA non-coding upstream 162942 10686687 ~ 10687042 (+)
G75468 NA non-coding upstream 163299 10686465 ~ 10686685 (+)
G75407 NA non-coding downstream 59348 10920216 ~ 10922341 (+)
G75398 NA non-coding downstream 78029 10938897 ~ 10942836 (+)
G75404 NA non-coding downstream 82582 10943450 ~ 10947486 (+)
G75552 NA non-coding downstream 272500 11133368 ~ 11133689 (+)
CI01000012_10223957_10235955 NA other upstream 625697 10223697 ~ 10236276 (+)
G73578 NA other upstream 2482357 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 3042129 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4925679 5922385 ~ 5929186 (+)
G71623 NA other upstream 5033379 5813517 ~ 5816605 (+)
G75533 NA other downstream 283949 11144817 ~ 11145739 (+)
G76385 NA other downstream 1769887 12630755 ~ 12675666 (+)
G76374 NA other downstream 1884663 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2154638 13029435 ~ 13038899 (+)
G76645 NA other downstream 2790991 13651859 ~ 13652234 (+)

Expression


Co-expression Network