G162111


Basic Information

Item Value
gene id G162111
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32736429 ~ 32739609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219610
AacaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaatgactttgaaacaatatagcaaacgacacagataccatagcaacaccttagaaaccacctagcaacgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaatgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATAAagcaaccaacacagataccatagcac
>TU219612
AacaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaatgactttgaaacaatatagcaaacgacacagataccatagcaacaccttagaaaccacctagcaacgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATAAagcaaccaacacagataccatagcac
>TU219613
TACTTTgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaacgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATATAGAaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATAAagcaaccaacacagataccatagcac
>TU219617
TACTTTgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaacgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATATAGCAACTAACACATAtatcacagcaacaccttagaaaccacctagcaatgactttgaaacaatatagcaaacgacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATATAGAaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaagaCcttagaaaccccctagcaaccactgtGAAACAATATAGCAACTAACACATAtatcacagcaacaccttagaaaccacctagcaatgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATATAGAaaccaacacagataccatagcaaccactttgaaaCAATATAGAaaccaacacagataccatagcaagaCCTTAGAACccccctagcaaccactgtGAAACAATATAGCAACTAACACATAtatcacagcaacaccttagaaaccacctagcaatgacTTTGAAACAATATAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219610 False 347 lncRNA 0.39 2 32737290 32738155
TU219612 False 282 lncRNA 0.40 2 32737290 32738155
TU219613 False 302 lncRNA 0.39 3 32736429 32738155
TU219617 True 778 lncRNA 0.39 3 32736429 32739609

Neighbor

gene id symbol gene type direction distance location
LOC103041297 LOC103041297 coding upstream 6578 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 34825 32681742 ~ 32701604 (+)
LOC107196951 NA coding upstream 170539 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 933866 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1221788 31381217 ~ 31514641 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 42465 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 166045 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 178534 32918143 ~ 33043136 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 465098 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1331550 34071159 ~ 34092737 (+)
G162107 NA non-coding upstream 48885 32678351 ~ 32687544 (+)
G162099 NA non-coding upstream 81264 32652026 ~ 32655165 (+)
G162087 NA non-coding upstream 100940 32633971 ~ 32635489 (+)
G162046 NA non-coding upstream 120960 32613718 ~ 32615469 (+)
G162043 NA non-coding upstream 156661 32577270 ~ 32579768 (+)
LOC107196950 NA non-coding downstream 2378 32741987 ~ 32744007 (+)
G162239 NA non-coding downstream 428108 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 436521 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 457356 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 513796 33253405 ~ 33253768 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 17154 32714183 ~ 32719275 (+)
G162032 NA other upstream 441400 32236316 ~ 32295029 (+)
G162017 NA other upstream 588239 32068862 ~ 32148190 (+)
efhb NA other upstream 1130939 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1841923 30854558 ~ 30894506 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3068256 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3372433 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3392806 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4014576 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4547558 37287167 ~ 37352779 (+)

Expression


Co-expression Network