G162178


Basic Information

Item Value
gene id G162178
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32564980 ~ 32568473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219709
cttatgttacatttctttcaaaaagtgctgctctttttttattagttttttaaataaaatgtaaaagaaaatgaatttaactcacgatatgagtagaaaatgtgtttagtttcaaatttacaaatgaagcaatgtttattagcccttggccaaacatactgtatgtaatataaatgtgtgtgtgggggggggttggggtttagtgtgtgtttatcgaaaatgtgttttgatatatgtttttcacaaaaaatgagccaatgccaataaaaattttttttttagtatcatttgatgaaaaatgaaaacaccacacaagggttaaagcgTAAAacttctgaggctggtaactctcgctttttctttcctggggcggtcctgatgagagccagttccatcattacatttttgatggtcttgaaatgtttcagattgactgaccttcattatttaatatatattttatctttacttagttgagtagttcttgcttctcataatatggattaaagcATTAGTCAAacagagctattattcactgtgtacctgtaactctacctcttcactactttacaactgatgctctcaaacactaaGAGAtaagaaatccaagtaattaactcttgatgagttcagcacagctgttaactgaaagcctgaattccagttgactctacctcataaagctatgaagaatctaaaatataaaacatattcttgtttgtttaacacttttatctacaatgtaaaataatgaaaaaaaaataataaaatcaggaAACACTGCAGGAATCACAACAGATTTTAGCAGGCCAAGAACTCGTAGCTCTGCTTGTAGACCATCTTTAGACCAGTTGCTCTGGTAGCGAACTCTTGCATGATTGTGAGTTCTTTGTTCCCGAAGTAGCCGCTGCAACTGATTGTGCCAACAAAAGAAAGTAGAACTATTCTACTGTTCTGAAAAAACGCTTCTTGACTTGATTTGacttgaaaaacactgaatttgtgtgaagctgtgtccaaacttttgactagtactgtatatgtacGCTAATAATCTCCATCTACatcatttattgtttatctCTCTCAGTTTATATGAAGCATTTCAGATTGTATATTCGTTGTATCTCCATCCAACAAAAATGGATGAAGATAATCACCATGTATCATCTTGCTTGATCCAGTATCACAATACACTATAAAGGATAACCCCTGTATCATATCTTCAAAATTTAAAATAGAACACatgattccaaacttttgaacggtagtgtatgtACCTGTAGGTTTCACTCGTCATAATGTTTGAGGAAATGAGTGAGTCATAAAAACTCCTTTTTGTGAGCCATACTGAAATACTGTAGAATGGACACTGGTCACTATTCTCCATGAAACTCAGGGTGAAAAGGGTCCGAAACACCTTCCATTCTGGATGATtatggatcatttggagtgcaAAAGCTGTTACAATGTTATATGGGAGCTTTTTGGTTAtaagtagggatgcaccaaatatttggcaactgaaaatatttgttaaaaaatggCACAAAAGTGTGTGAAATTAAGTCAAAAGACAAAACAATTTATATCAAAACAATGActagtttattttaattcaagctacttgtgccaacaccctggtttcTGAGTATAATACGACAATTGGCCTGAGCttcttgtgccaacaccctggttgctgagtaaaACATGGCAATTGGTccaagctgcttgtgccaacacacCTGGTTGTTGAGTAAAATACGGCAATTAGCCCAAGCttcttgtgccaacaccctggttactgagtataatacgaCAATTGGCCCATATGCTTGTGCCaataccccagttgctgagtataatatgacaattggcccaagctgcttgtgccaagtccctggttactgagtataatacaacaattggCCTGAGATTTTTTTGCCAGTTCTCTGGTTTCTGGGTAAAATATGACAATTGGCTCAAGCTggttgtgccaacaccctggtttctgagaaaaatacgACAACTGGcccaagctgcttgtgccaagTCTCCAGTTGTTGAGTGAATTAAGAAAATTGGCCCAAGTTGCTTATGCAAACACGccggttactgagtataatatgacaattggCCCTAGCTGGTTGTGCCAACATCCTGGTTGCtgagtaaaatacaaaaaacaacaattggCATGAGCTTCTTTCACCAATTCTCTGGTTACTGAGTAAAATATGACAATTGGCCTTAGCTGTTTGTGCTAAAACCCGGGTTGTTAAGTAAAATATGACAATTGGCctgagctgcttgtgccaatACCCCGGTTACTGAGTAAATATGACAATTGGCCTTAGCTGCTTGTGCCAATACCctggttactgagtataatcaACAATTGGCCTAaactgcttgtgccaacaccctggttgctgagtaacACATGGCTAAAATACtaattgctttttgtttgaagatcaagacaaaaaacatttagtCTAAGGTTAATGCAAAcctaaaaaaagagtttaagcCAAAGCTTTccatttggtgcatccctagttaTTAGAGGTCTAATAGATCTTTTAGCCTTCACTTATAGATCAATCAGACCACACATACATAAGAAGTAAGTTGGACACTAGGAAATAATGGGTGGGATTAATTGCTGCGGGAAACAGCCCCATCTTCTGGGCTGTACACTTTTTATCTGTTATTTTGTTCCTTCCGCCCTGCTAAATAACTCACAGATAATACATTAGCTTCTTGGCCTGTTTCCTGGACacggattaagcctagtcttggccTAATCGACAGCGTCACTGGTGATTCTCCGTGGAAAATCCTTTTGATTCTGGGGCTTAATCTTTGTCCGGGAAGCCAGCCCGTAAGGTACAGTCAGCATCATGTGAACGTTAAATATCTCTTAGCTCGGTCGTCTTTGATCATAATCCCTACAGCTGCTGGGGGGAGCCTTCTGGAAAAGACCACAGCGCTACCTTAAACCACCCCAGGGCTCTTCTAATGCAGCGCTTATTGAAATGCTAACTTTGAGTCAGATGCATTGCTTGGATGTTTAATCACCTTGTACCAGTTAAATGTCTGGAAACACCCATTAATGTTCAATAATTCAGAGATTTATTCACCACAGGAGTGAAGACGTTGAGTAAGAAGAATTCAATAGAtttgaaatgattaaaaaaagatgttaAATGAATCATTTAGATTCTaaaatttcagatttttcaaTGTAGCCTGTATTGACCTTCATGAAGATTCACACCTTGCTACTTTTTTTGCTCTTGTAGCTTCATGAAGAGCCATAAGAATTCAAGGTAACACTTCATTTATATGAATGGCTTGTCTATTAGACTccataaacatattcataacacattataatgcatttatgagGCATTATGCATATGgttatacatattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219709 True 3442 lncRNA 0.37 2 32564980 32568473

Neighbor

gene id symbol gene type direction distance location
LOC111194816 NA coding downstream 222931 32322885 ~ 32342049 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding downstream 246105 32197585 ~ 32318875 (-)
LOC103038585 rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637 coding downstream 981933 31559170 ~ 31583047 (-)
fam110d LOC108426366 coding downstream 1496893 31030479 ~ 31068087 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 1719343 30791792 ~ 30845637 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 22423 32590896 ~ 32599250 (-)
LOC103041900 LOC103041900,LOC107592163,LOC103356858,LOC107688211 coding upstream 47060 32615533 ~ 32651073 (-)
LOC103040777 LOC103040777,LOC108439298,LOC108256343,LOC107711540,LOC107671441 coding upstream 134498 32702971 ~ 32719382 (-)
LOC107196877 NA coding upstream 1473315 34041788 ~ 34049587 (-)
LOC111194736 NA coding upstream 1595663 34164136 ~ 34173819 (-)
G162154 NA non-coding downstream 292704 32271541 ~ 32272276 (-)
G162152 NA non-coding downstream 314861 32249185 ~ 32250119 (-)
G162149 NA non-coding downstream 359930 32204684 ~ 32205050 (-)
G162131 NA non-coding downstream 394117 32106674 ~ 32170863 (-)
G162181 NA non-coding upstream 41277 32609750 ~ 32610194 (-)
G162174 NA non-coding upstream 45260 32613733 ~ 32615476 (-)
G162183 NA non-coding upstream 79686 32648159 ~ 32829428 (-)
G162211 NA non-coding upstream 309353 32877826 ~ 32879201 (-)
G162210 NA non-coding upstream 312532 32881005 ~ 32960527 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 1783272 30699170 ~ 30781708 (-)
G161711 NA other downstream 2239122 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 3623593 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 3912033 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 4986062 27429941 ~ 27578918 (-)
tap1 NA other upstream 83495 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 1529455 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 1832190 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 3570430 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 3770907 36339380 ~ 36354701 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1640247 NA non-coding NC_048583.1 CM023237.2 55422393 ~ 55422719 (+)