CI01000012_10922409_10930704 (DDX43)


Basic Information

Item Value
gene id CI01000012_10922409_10930704
gene name DDX43
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10922409 ~ 10931285 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10922409_10930704.mRNA
TTTTAGTTCTTGGGCCTTTATTGGTCCAAAAGCCATTTATTGCAGTGGCTGTCAACACCCAGTGGTCCGCAGAGATAAACCGTGGTGCGCATGATGCTGAGGTGCTTATCTTTGGAAGCTGTGATGCTCAGCTCAAAGCCAAAGACATGATTGAAGATCTGGTGCATGGGAACTCTGTCAGAGGTCCTGGATACCGCAATGGAAATAGCAATGCAGAATATCAGAGTGACTCATGCTGGCCAGCTTCTGCTGTACGAGCTGTGGCCGCAGCTGCTCCAACACCTTTACCTATTGACTGGACTGCACTTAGAGAAAACCGTGACAAATATGAAGCTATTAAATGGCAAGATCTTCCCACTCTAAAGAAGGATTTCTATATTGAAGCAAAATCAGTGGCTGCTCGTAGTGCAGAAGAAGTCAAAATCTGGAGAAAAGAGAACAACAACATCTTTGTGGATGATCTGAAAGACGAGGATAAAAGAACCATTCCCAATCCAGTGTGCACTTTTGAGGAGGCTTTTGCTCACTATCCTGGAATAATGGAAAACATTGTCCGAGTGGGATTTCAAAAGCCAACTCCCATTCAGTCACAAGCCTGGCCAATTATCCTGAAAGGAATAGACCTCATTGGAATAGCCCAGACAGGAACAGGCAAAACTTTGGCCTACCTGCTTCCTGGCTTTATTCATATGGATCAGCAACCTGTCATCTGTATCTATGGAGGTGGTGACCGAAAGGCCCAGATTAAAGTAGTGACCAGTGGTGTGGACATAGTCATTGCCACACCAGGACGATTAAACGATCTGCAGATGAATGAGCTCATCAACTTGCGCTCCATCACCTATCTGGTGTTGGATGAGGCTGATAGAATGTTGGATATGGGCTTTGAACCTCAAATCATGAAAATCATTCTGGATATTCGACCTGACAGACAAACTGTAATGACTAGTGCCACCTGGCCAACAGGTGTCAGGCGGCTGGCCAAATCCTACCTGAAAGACCCCATGATGGTTTATGTGGGAACCTTAGATCTAGCAGCGGTGAACACTGTTCATCAGACAGTGCTGTTCGTTCAGGAGGAAGAAAAAAAAGACTATGTTTTTGACTTCATCCACCGAATGGAGCCTCAAGACAAAGTACTAATATTCGTTGGGAAAAAAATAAATGCTTGCAATGTAGATTTTGTAGATATTTTTATAGCAGCAAAGGTTGTTTCTATTCTAGAGGTGCTGTTTGTGGGATCTTTCATCCTCAAACCATGGAAAAAAAACTATGCAAGAGCCGATGACCTGTCCAGTGACCTGTGTCTGCAGGGTGTAGCGGTTCAGTCTCTGCATGGAGACAGAGAGCAATGCGACAGAGAAGAGGCACTGCAGGACTTTAGAGATGGTCGTGTGCGGATTCTGGTGGCGACCGACCTGGCCTCCCGGGGGCTAGATGTTCATGACATCACGCATGTTTTCAACTATGACTTCCCTCGGAATGTGGAGGAGTATGTGCACCGTGTTGGGAGAACTGGTCGAGCAGGGAGGTCCGGTGCCTCTGTAACCCTGGTAACAAGAGAAGACTGGAAAGTAGCTTCTGAGTTGATCACCATCCTGGAGAGATCTGGTCAGGTAAACACACCTGCAGGCATCCACTCCTTTCATCATGTTTATCACTGCTATGTAAAGAACACAAATCAGCTGACTAGTTATAAATCGGATGCTTCATTTCTCACCGCAGATTGTGTTGTGTTGATGTGGATGTACCGAAATGTCTGAGAGCTTTTTAGTTCACTTTTTAGTCATTGGCAGTGCTGGGAGTAAAGCATTACAAGTAACGTGAGTTGCTAAATGTGAACATGCATTTACTCATCTCACTTGCACAAAAACAGATTCAGTATTCCTCAAAATGAATAAAAATAGTGAAATGCAAACTCAGAATATTACGCAAACCTGCACTAATGTTAAATAACACAAATTTACTTAATGTATTTAATTTCACTTTATTAACCAATGCCTTTACTGCTGACCTTCAATGATCCAACCATACTAAGCAAAAATGACTTTAGATAAACATCACATTTGTTTAATTTTTTTTCTTGTCTGAGCTGTGTCCTCTACTGTACAGGTGTGAATTTGCATTTCCTTCTGCCTGAGGCTTATTCATTTCACTTATGGTGTGAAAGGGCCTTTACATTTGCCAAAAATAGAATAACTTTTTTTTTTGTCATTAAAAACAAACAAGCCAGCCCAGTCCTGATGAGGGGGAGTAATGCATTACTTGTAAAAGTAACTTTCCCCCTACACTGGTCATTGGGACAGATCCTGCTCTGCATGTGTTCTGTAAATCTAGGCAGATA

Function

symbol description
ddx43 Predicted to enable RNA binding activity and RNA helicase activity. Orthologous to several human genes including DDX43 (DEAD-box helicase 43).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10922409_10930704.mRNA True 2344 mRNA 0.43 14 10922409 10931285

Neighbor

gene id symbol gene type direction distance location
CI01000012_10892631_10918617 KCNQ5 coding upstream 3792 10892631 ~ 10918617 (+)
CI01000012_10852509_10860759 NA coding upstream 61541 10849984 ~ 10860868 (+)
CI01000012_10714254_10788932 NA coding upstream 133477 10714254 ~ 10788932 (+)
CI01000012_10661067_10678624 OGFRL1 coding upstream 242993 10660689 ~ 10679416 (+)
CI01000012_10608607_10619833 NA coding upstream 301951 10608607 ~ 10620458 (+)
CI01000012_11011437_11013922 NA coding downstream 80079 11011364 ~ 11013931 (+)
CI01000012_11043669_11044569 NA coding downstream 112342 11043394 ~ 11044670 (+)
CI01000012_11091957_11093675 CCDC85A coding downstream 160672 11091957 ~ 11093774 (+)
CI01000012_11277561_11292490 VRK2 coding downstream 346276 11277561 ~ 11292636 (+)
CI01000012_11319849_11326035 NA coding downstream 387775 11319060 ~ 11326904 (+)
G75407 NA non-coding upstream 68 10920216 ~ 10922341 (+)
G75477 NA non-coding upstream 125755 10796419 ~ 10796654 (+)
G75474 NA non-coding upstream 218037 10704151 ~ 10704372 (+)
G75470 NA non-coding upstream 234935 10687242 ~ 10687474 (+)
G75469 NA non-coding upstream 235367 10686687 ~ 10687042 (+)
G75398 NA non-coding downstream 7612 10938897 ~ 10942836 (+)
G75404 NA non-coding downstream 12165 10943450 ~ 10947486 (+)
G75552 NA non-coding downstream 202083 11133368 ~ 11133689 (+)
G75554 NA non-coding downstream 204088 11135373 ~ 11135605 (+)
CI01000012_10223957_10235955 NA other upstream 698122 10223697 ~ 10236276 (+)
G73578 NA other upstream 2554782 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 3114554 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4998104 5922385 ~ 5929186 (+)
G71623 NA other upstream 5105804 5813517 ~ 5816605 (+)
G75533 NA other downstream 213532 11144817 ~ 11145739 (+)
G76385 NA other downstream 1699470 12630755 ~ 12675666 (+)
G76374 NA other downstream 1814246 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2084221 13029435 ~ 13038899 (+)
G76645 NA other downstream 2720574 13651859 ~ 13652234 (+)

Expression


Co-expression Network