G162247


Basic Information

Item Value
gene id G162247
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33176130 ~ 33176329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219801
ataatttattgtggtgacggacagttctggtggaaacagtagagttgaggtgcacattgaattctgtcgtgatttgatcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtgg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219801 True 200 lncRNA 0.45 1 33176130 33176329

Neighbor

gene id symbol gene type direction distance location
LOC103043655 eif3h coding upstream 132994 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 260481 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 296874 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 446279 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 474526 32681742 ~ 32701604 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 28378 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 894830 34071159 ~ 34092737 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 942464 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 999779 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 1037557 34213886 ~ 34217803 (+)
G162239 NA non-coding upstream 7979 33167717 ~ 33168151 (+)
G162097 NA non-coding upstream 428419 32648159 ~ 32747711 (+)
LOC107196950 NA non-coding upstream 432123 32741987 ~ 32744007 (+)
G162111 NA non-coding upstream 436521 32736429 ~ 32739609 (+)
G162107 NA non-coding upstream 488586 32678351 ~ 32687544 (+)
G162250 NA non-coding downstream 20636 33196965 ~ 33197176 (+)
G162255 NA non-coding downstream 77076 33253405 ~ 33253768 (+)
G162269 NA non-coding downstream 305019 33481348 ~ 33483410 (+)
G162281 NA non-coding downstream 485510 33661839 ~ 33668497 (+)
G162282 NA non-coding downstream 527754 33704083 ~ 33705389 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 456855 32714183 ~ 32719275 (+)
G162032 NA other upstream 881101 32236316 ~ 32295029 (+)
G162017 NA other upstream 1027940 32068862 ~ 32148190 (+)
efhb NA other upstream 1570640 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 2297803 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 2631536 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 2935713 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 2956086 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 3577856 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4110838 37287167 ~ 37352779 (+)

Expression


Co-expression Network