G162255


Basic Information

Item Value
gene id G162255
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33253405 ~ 33253768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219817
atcccatttctccccttggccctaccccttacccctaccccttcttttcgagtgtaatccttccggggtaaaatcctacccctaggaattgggacaacccttcaagcacccggtgaaaggtgaatcttattgaaaatagcctccataatatactagaaattgtatatcacactggttcccaacactggtcctggagcaggtaatgtgttacaaaaacaatataatgtgcaagaatatgggtcctcagtgacagaggaatcactggtatatcacaatgacgtttgtcaatgaacaataaatacataaataaatagcactgatttatgaccaggctactag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219817 True 339 lncRNA 0.42 2 33253405 33253768

Neighbor

gene id symbol gene type direction distance location
LOC103043655 eif3h coding upstream 210269 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 337756 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 374149 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 523554 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 551801 32681742 ~ 32701604 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 817391 34071159 ~ 34092737 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 865025 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 922340 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 960118 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 1046250 34300018 ~ 34315224 (+)
G162250 NA non-coding upstream 56229 33196965 ~ 33197176 (+)
G162247 NA non-coding upstream 77076 33176130 ~ 33176329 (+)
G162239 NA non-coding upstream 85254 33167717 ~ 33168151 (+)
LOC107196950 NA non-coding upstream 509398 32741987 ~ 32744007 (+)
G162111 NA non-coding upstream 513796 32736429 ~ 32739609 (+)
G162269 NA non-coding downstream 227580 33481348 ~ 33483410 (+)
G162281 NA non-coding downstream 408071 33661839 ~ 33668497 (+)
G162282 NA non-coding downstream 450315 33704083 ~ 33705389 (+)
G162329 NA non-coding downstream 543672 33797440 ~ 33797674 (+)
G162336 NA non-coding downstream 583709 33837477 ~ 33886844 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 534130 32714183 ~ 32719275 (+)
G162032 NA other upstream 958376 32236316 ~ 32295029 (+)
G162017 NA other upstream 1105215 32068862 ~ 32148190 (+)
efhb NA other upstream 1647915 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 2375078 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 2554097 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 2858274 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 2878647 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 3500417 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4033399 37287167 ~ 37352779 (+)

Expression


Co-expression Network