G162336


Basic Information

Item Value
gene id G162336
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33837477 ~ 33886844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219918
gtgccaagtcctgctggaaaataaaatctgcatctccataaaagtttcagcagagggaagcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacagcagcagatgatcagcatgtctctccaaaccatcactgatcatcagtaaattttacatttcatttgtaaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaactgcttgaggtctagtgtgaagtttccaccaatcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttatta
>TU219919
ttggtggaaacttcacactagacctcgagcagatgatcagcatgtctctccaaaccatcactgatcatcagtaaattttacatttcatttgtaaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaactgcttgaggtctagtgtgaagtttccaccaatcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219918 True 351 lncRNA 0.41 2 33852212 33886844
TU219919 False 237 lncRNA 0.43 2 33837477 33886844

Neighbor

gene id symbol gene type direction distance location
LOC103043655 eif3h coding upstream 794341 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 921828 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 958221 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 1107626 32721244 ~ 32729851 (+)
LOC103041596 LOC108439295 coding upstream 1135873 32681742 ~ 32701604 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 184315 34071159 ~ 34092737 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 231949 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 289264 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 327042 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 413174 34300018 ~ 34315224 (+)
G162329 NA non-coding upstream 39803 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 132088 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 168980 33661839 ~ 33668497 (+)
G162269 NA non-coding upstream 354067 33481348 ~ 33483410 (+)
G162255 NA non-coding upstream 583709 33253405 ~ 33253768 (+)
G162373 NA non-coding downstream 207069 34093913 ~ 34097597 (+)
G162403 NA non-coding downstream 283556 34170400 ~ 34177227 (+)
G162405 NA non-coding downstream 316059 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 333268 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 512390 34399234 ~ 34399448 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1118202 32714183 ~ 32719275 (+)
G162032 NA other upstream 1542448 32236316 ~ 32295029 (+)
G162017 NA other upstream 1689287 32068862 ~ 32148190 (+)
efhb NA other upstream 2231987 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 2959150 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1921021 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 2225198 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 2245571 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2867341 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3400323 37287167 ~ 37352779 (+)

Expression


Co-expression Network