G162373


Basic Information

Item Value
gene id G162373
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34093913 ~ 34097597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU219965
ttaatcatgggtgtgttttgggcgtaacatgatattaaaccaatcagtgtatcagtcatcattctctttaagaggcagatgagctctgactttggcgcgttcgtatcttaacagtgcggcgcttttgcgagtctcagcagaggatactgagctgctcattcacactgtgaagatacaccagcagctcttttaagggaacagcgatgttattttattctttgttcTGATTATTGCAGAGTTAAAAGTCGGGTGTGTGTGATTATCACGTGGGATTGAACAAGCGCTGGGTGCACCTATAGAAATAGACTCTGATGATGAtcgactgttgtcagggttttaatcagtcagtggagctcctgtggagttttccaccaccaaaatatacagaaacaagtcagaaatttacctgaatacacctcacttccagaccaccacacccatcagtgatcagatttattcctaaactctataaacactattttaacagcgcgggaccaaggtgtgaaaatagactgttgatggggtgtaagatagcaatcaGAATCACAATGTATGATAGGGCCCAAAGAGTACAAGTCCACTTGTCCTTTCACCTCaacgcatcctattcatttcaatagagAGAGCTGCTGCATGTATTTAGAACATGACTGGTTGCTTTGCAAAGGCagattttaattttatcaaatgAGCACAGCTAATGGGCAGTGTCTAGCCAATCAGGGCAGAGAGGGCTGGTACGTTATACAAGCATCACACACAGAGCACACATGCCTTTCACACATGGAGAAAAAAGGCTTTTAATGTTGGTATCTAAATCTtaaattaagaagtttaaatcTACCATTTTTTAaggcttttctttttcttagtCAGTTCTAAATAGTCCAGCAGACTAAAGGACTTCAAAACTTCTATCGAAACAAAATTCACAAGTGACTTCACAAATTTAAAGCTGGCATACTTTCTGTGGCTTCGTTTTCTTCACAGATTAAAATCAGAGCTGTACAAAAAGTTTTAATTCAATTGAATTGAAAATGACTCCTAAATTCTGAATCAAATTggattgtcccacccatttagctgtTACTCAGCTCTatatccccccatcactagtgattccacaacaccaggagggtgaagactagcacatgcctcctccgactcatgtgaagtcagactccgcctcttttcaaactgctgctgatgcagcattgctgagtagcatcacagcgcactcggaggaaagcgcagcgactcggttctaatacatcagctcacagacgcagccttgtgctgatctacatcaccctagaagtgataagcggaaaaagcgccatctactgtacccacccagagagaacaaggcccattgtgctctctcagagctctggcagctgatggtaagctgcatgactgggattcgaaccagcaatcttttTATCATAATGGCAGCAAGTATTATATTCTCACTgatatgtgattaaaaactgatCTAAATTGCAATAAGTTCAACTCTACCTGTAATTTCAAATGTAATTCAATTTCAAACTCATTAAATTGAATTCAAGTCTAAAATTCTGAATTTTGCTGGTTAGAATCTGATGCATCAGAgctgcctagtgatgctgcatcagcagcagttgggaAAGCGGTGGGtttgatttcacatgtatcagtaTAAGCTGGCAGTGTGTGTGGGCATCTCtgacatatataaatatatatagagagcactgaaaaaaaataagagagcactcaaaaaaaattgagtttctttgatttaccaaattgaaaacctctggaatataatcgagaggaagattgatgatcacaaaccatcaaaccaagctgaactgcttgaatttccgcaccaggagtaaaggcaaaaagttatccaaaagcagtgtgaaagactggtggaggagaacatgccagtatgcatgaaaactgtgattaaaaaacagcttccgcagctgatggcaagctgcatggctgGGATTCAAACCTTTTTGGCCTTAGTCCGCTGGCACCACTCACACCCCTATAATTAGGGTGTATTTAACAATGAAgctttacagtacagtatatgatTACAACATGAGTTTCATACAGATGTGTCTGTacttccaaaaatatatatatattttgaattgTACTACATTTTATACACATCTCTAGCAATGCTcacaacactaggagggtgaggacAAACGCATGCCAAGAGATCCAGCATAGCAAAAAGCATTGAATCAAAATGCAAATGGACTTCTATTATAAAAAGGCACTTCACACAGATCCACTTctttcatcacacacacacaaaactatatataaaaagagagagcagggcACTAACACACAGTCAAATATGACGTTTCTCATGTAGTTAAACAAATctgaacaaaacattaaatttcccttttttttcctttagcaagtaagaaaatgtaacaattTATTCACTATCTTGGTAATTAACATAATACACACTGACTTGCCAacagtcatgggacagcagtatgttaACTGATGatgttaattttagttttatctcAGGGAATGGCTTGCAAATGCTTgaacctgtataagttgtgaggtgttatcttgttgaACACTggcagtgtgctcatggcaaggtgatttGAGTTATTTAAGTGAGTTTAAGTAAGGTCTGATAGTGAGCGCAGATGGATGGAACATTTATGTGCATATATTTAACAATTCCTCTATTCACAGTGTCACTTGTGTACTAGGAATACAAGATAAGCGACACTAtttaccatccacagtggacagtagtTGGGCAGACGAtagtaatgatcgtgactggcgCCTTTTGGCTAGAACTTTCCATGTGAGCAGACAAGCAACTctagcattctttagcttccagaACGACTCTAGAACGAGTggcccaagagtgaacacaaacaTGCATGCAGGCAACACAGGCATTTTTTTACCCAATTGCTTGtgtgaaagaaagggagagaaagctGCTCCctcgtgtgcatattcatgaagtgcatgcaaaagagagagggatctgattggcctgttctatGAAAAGAgactgtgagtcagccaatcaattttaagtgttggtgggcagtgtttttcttctcctcctgaATGGGATGGTGggatgcgttcaggagcatcatggctcccatcaaaacttttcacctctgactactccaaagtatatccatgtctggtaaaaaTACATTGCAAGTTTCTGCCCTATGAAATGGAAttatttcagtgtgtattaTGTTAATCGTGATTTTAAAAGGCTGAAACATAGTATTCTTTTAcgcatgtaaaaataataaacagcctCCACACTGGGGGGTTAGTTTAACAAACTGTTATAACAAAGACTGCCCTTTATTCCTTcatataaaatcataaataCAGCCTTTTTTTGGAAGTttcccttcattttttttaccattaaagtaataataataaaaatacacagtgaTCGTTAAAGATGTATTTAAGTTTAgataaagacattaaaactgtattaaatttGGAACGATTTGCAAGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219965 True 3561 lncRNA 0.39 2 34093913 34097597

Neighbor

gene id symbol gene type direction distance location
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 1176 34071159 ~ 34092737 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 96469 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1050777 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 1178264 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 1214657 32782074 ~ 32879256 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 21196 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 78511 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 116289 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 202421 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 221616 34319213 ~ 34349880 (+)
G162336 NA non-coding upstream 207069 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 296239 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 388524 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 425416 33661839 ~ 33668497 (+)
G162269 NA non-coding upstream 610503 33481348 ~ 33483410 (+)
G162403 NA non-coding downstream 72803 34170400 ~ 34177227 (+)
G162405 NA non-coding downstream 105306 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 122515 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 301637 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 404003 34501600 ~ 34517219 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1374638 32714183 ~ 32719275 (+)
G162032 NA other upstream 1798884 32236316 ~ 32295029 (+)
G162017 NA other upstream 1945723 32068862 ~ 32148190 (+)
efhb NA other upstream 2488423 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3215586 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1710268 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 2014445 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 2034818 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2656588 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3189570 37287167 ~ 37352779 (+)

Expression


Co-expression Network