G162403


Basic Information

Item Value
gene id G162403
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34170400 ~ 34177227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220004
tgttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtggtgtgtttgatgttagttggtaaatgtgagacgggtggttgtggtgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtattttatttggt
>TU220005
tgttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtggtgtgtttgatgttagttggtaaatgtgagacgggtggttgtggtgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtgttgtgtttgatgttaggtggtaaatgtgagacgggtggttgtgttgtgtttgatgttattggttaaatgtgagacgggtggttgtgttgtgtttgatgttagttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220004 False 281 lncRNA 0.41 2 34170400 34177227
TU220005 True 414 lncRNA 0.42 2 34170400 34171317

Neighbor

gene id symbol gene type direction distance location
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 8646 34118793 ~ 34161754 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 77663 34071159 ~ 34092737 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 172956 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1127264 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 1254751 32905654 ~ 32915649 (+)
LOC103027681 NA coding downstream 36659 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 122791 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 141986 34319213 ~ 34349880 (+)
pepd pepd coding downstream 630279 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 890091 35067318 ~ 35512777 (+)
G162373 NA non-coding upstream 72803 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 283556 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 372726 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 465011 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 501903 33661839 ~ 33668497 (+)
G162405 NA non-coding downstream 25676 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 42885 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 222007 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 324373 34501600 ~ 34517219 (+)
G162518 NA non-coding downstream 477734 34654961 ~ 34655440 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1451125 32714183 ~ 32719275 (+)
G162032 NA other upstream 1875371 32236316 ~ 32295029 (+)
G162017 NA other upstream 2022210 32068862 ~ 32148190 (+)
efhb NA other upstream 2564910 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3292073 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1630638 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1934815 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1955188 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2576958 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3109940 37287167 ~ 37352779 (+)

Expression


Co-expression Network