G162442


Basic Information

Item Value
gene id G162442
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34399234 ~ 34399448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220050
ctcctaaatatcttgtaatttaactatgcataaccataaccagttagattaagactatgcttgaagtgcaaacagagacagaacatttttttaaatacagtacagagctaagggattagtacacctgtctatgaaacagtcacgtgtaggatttatttacagtatttacatatgttttatatcttgttggtcactctgttactgtttattgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220050 True 215 lncRNA 0.31 1 34399234 34399448

Neighbor

gene id symbol gene type direction distance location
LOC103044586 NA coding upstream 49354 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 84010 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 181431 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 199462 34176108 ~ 34199772 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 237480 34118793 ~ 34161754 (+)
pepd pepd coding downstream 408058 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 667870 35067318 ~ 35512777 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 1150444 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 1386882 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 1489506 35888954 ~ 35909612 (+)
G162408 NA non-coding upstream 177898 34220112 ~ 34221336 (+)
G162405 NA non-coding upstream 196128 34202903 ~ 34203106 (+)
G162403 NA non-coding upstream 222007 34170400 ~ 34177227 (+)
G162373 NA non-coding upstream 301637 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 512390 33837477 ~ 33886844 (+)
G162505 NA non-coding downstream 102152 34501600 ~ 34517219 (+)
G162518 NA non-coding downstream 255513 34654961 ~ 34655440 (+)
G162530 NA non-coding downstream 377759 34777207 ~ 34783691 (+)
G162533 NA non-coding downstream 393085 34792533 ~ 34792826 (+)
G162534 NA non-coding downstream 393451 34792899 ~ 34793146 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1679959 32714183 ~ 32719275 (+)
G162032 NA other upstream 2104205 32236316 ~ 32295029 (+)
G162017 NA other upstream 2251044 32068862 ~ 32148190 (+)
efhb NA other upstream 2793744 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3520907 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1408417 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1712594 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1732967 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2354737 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2887719 37287167 ~ 37352779 (+)

Expression


Co-expression Network