G162518


Basic Information

Item Value
gene id G162518
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34654961 ~ 34655440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220145
ggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcgagacaataaattattgtggtcttaaaccaggtgtttcagtttcattgtccaacccctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220145 True 285 lncRNA 0.45 2 34654961 34655440

Neighbor

gene id symbol gene type direction distance location
LOC103044586 NA coding upstream 305081 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 339737 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 437158 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 455189 34176108 ~ 34199772 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 493207 34118793 ~ 34161754 (+)
pepd pepd coding downstream 152066 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 411878 35067318 ~ 35512777 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 894452 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 1130890 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 1233514 35888954 ~ 35909612 (+)
G162505 NA non-coding upstream 137742 34501600 ~ 34517219 (+)
G162442 NA non-coding upstream 255513 34399234 ~ 34399448 (+)
G162408 NA non-coding upstream 433625 34220112 ~ 34221336 (+)
G162405 NA non-coding upstream 451855 34202903 ~ 34203106 (+)
G162403 NA non-coding upstream 477734 34170400 ~ 34177227 (+)
G162530 NA non-coding downstream 121767 34777207 ~ 34783691 (+)
G162533 NA non-coding downstream 137093 34792533 ~ 34792826 (+)
G162534 NA non-coding downstream 137459 34792899 ~ 34793146 (+)
G162535 NA non-coding downstream 138129 34793569 ~ 34793832 (+)
G162581 NA non-coding downstream 188847 34844287 ~ 34892308 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1935686 32714183 ~ 32719275 (+)
G162032 NA other upstream 2359932 32236316 ~ 32295029 (+)
G162017 NA other upstream 2506771 32068862 ~ 32148190 (+)
efhb NA other upstream 3049471 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3776634 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1152425 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1456602 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1476975 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2098745 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2631727 37287167 ~ 37352779 (+)

Expression


Co-expression Network