G162593


Basic Information

Item Value
gene id G162593
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35498034 ~ 35520791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220248
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtaagtgaacTCAAACGGACGCTTCTTTCttatccaaaaaataaaaaaaatgtaaaactcttcCGTTGTCTGCCCCTCCCCCTTCCCCTCCCCCCTCCACTGAAAACACAGATTCTACTGTAcgtaaaagacattttttttgtgaaggtGAAGCTGAGAAGTGAATGTATTCCATCCGTCGTTGGTGCACAAGTGTACAAAACCCGTCATCTAATGCCCTTTGCCTTATTTTTACACTGCCAATCAACCAGTGTGAATCAGGAAGACATTCTTCaggtagctctctctctctctctctttctctctctctcttctctctctctcgttctcctcctctctctttctttctgttga

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU220248 True 424 lncRNA 0.44 2 35498034 35520791

Neighbor

gene id symbol gene type direction distance location
pepd pepd coding upstream 659007 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 1148154 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 1182810 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 1280231 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 1298262 34176108 ~ 34199772 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 29101 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 265539 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 368163 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 475181 35995972 ~ 36064422 (+)
prtg prtg coding downstream 553015 36073806 ~ 36110407 (+)
G162635 NA non-coding upstream 51693 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 157099 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 178387 35317946 ~ 35319647 (+)
G162610 NA non-coding upstream 262946 35234290 ~ 35235088 (+)
G162609 NA non-coding upstream 263330 35234229 ~ 35234704 (+)
G162746 NA non-coding downstream 307229 35828020 ~ 35828825 (+)
G162829 NA non-coding downstream 600931 36121722 ~ 36123863 (+)
G162848 pigb non-coding downstream 659049 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 661969 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 662928 36183719 ~ 36185659 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 2778759 32714183 ~ 32719275 (+)
G162032 NA other upstream 3203005 32236316 ~ 32295029 (+)
G162017 NA other upstream 3349844 32068862 ~ 32148190 (+)
efhb NA other upstream 3892544 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 4619707 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 287074 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 591251 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 611624 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 1233394 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1766376 37287167 ~ 37352779 (+)

Expression


Co-expression Network