CI01000012_10958668_10973745 (RIN2)


Basic Information

Item Value
gene id CI01000012_10958668_10973745
gene name RIN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10958334 ~ 10973745 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10958668_10973745.mRNA
CTGATTGACACATTCTCCACGGAGATCTCAGAGCTAAAGCAGGAGATGGTTCAGCCAGCCAGAGAGCCGGAGACAGAGATCTTACAGGGTCTGGAAGGAGAGGTGAGTGGTTTGTTCCTGCAATCTTCTGCCTGTGCTGGTGCGCCTGGAGTGAGGGATTCTGGGTATGACTCTCTACGCAGACGCATGAGCATCCTGGACAGACTGATGCAGACACACTCTGTATGGTTGCTGCTGTCACTCAGTGATGAGGAAGCCAGACGCATTCTGCAGCCGCAGCCGGCAGGGAGTTTTGTGGTGAGGAGGTGTTATAAACTGCAGAAAAAGGTGATTTCCCTGCGGATGGACAGTGACACACTGATTGTACGGGACTTCCCTGTTAAAGAGAGCCAGTATACTTTTTCCCTGGAGGGCTCAGGGATCAGCTTTGCAGACCTCTTTCGACTGGTGGCGTTCTGCTGTATCAGCAGCTCTTCTCAAGATTCATTTGTGCTCTTTAGGGATGTTCTGCCCTTCACCCTGAAGCTCCCTGAGGCCATCGCAGCTGCGAAAACCCTTACAGATCTGGAGGAAGTGGCTCAGTTCGGAAGAGGTTTCTGGGACTCTAAACTGTGCAATAAGAAGGAGTCTTCTGTGTCTGGGGAGACTGTTTGTAACAGTCAGAGACTAAAAGAGTTGGGCATTAATTTCTCCCCAAGAGCCATCCCATTCACTCGGACCCCTTCTGAACTTGAATGCAGTCAATCCAACGGAGCGCTGTGCTTCATCAATCCCCTCTTCCTGCAAACACACCAACCTGACCCTTCATCCAAAAAGCAAGAAACATCCCCGGCCAAAGCAGGTGGCTCTCAGCACCACCAGAGTGCTCTGCATAGAATAGATCGCCAGAACTGTGATAGCAACATCTTCTGCAGTACAAGCAGCAAACAAAACAAATCACACATAAGTGTGAGTAGATCCAAGAGTGAGAGATCCCCACCACCTCGACCCCCACCTCCCCGCTTTGCCTCCGGCAGATCAGCAGTTCTCCGTAAACAGAAGACCATGCCTGAGACGGTCTGTTGGATCAAAACGCCTCAGGAAAAGAGCAGCCTACTGGGGAGGTTGGGATCATCCTTTAGTTCCTTATCTCCCTCATCCTCCCCACCAAAAAAGTTCAGTAAGCCAATCTTGGTGCCCTCATCTCGCAGTAAGAATTCCTCTGGCCTGCTTGACGCAGACGGTCTCCGCTGCCAAATGGCCCTGGATGACCAGACCATTGATGATGCCGTGTCTTGGAGCCTGGCTAAGATGTCTTCGTGCAACACCCCCAACCTGGAGAACAGCAGCCCTGCAGATGAGCACTGCACCACAGGACGAGAGCGACTGAGTGACATCAGCATCTCCACCTCGTCCTCAGACTCCCTCGACTTCACCCACAGCTTCTCATTGCCTATGGAGGCCAGTCCCTCCAGAACTGAACGTCCCACTGGCGACAGCAGCCTGGAGGAGGAAGAAGAGGAAGAAGATGACGGCATCAACTTGGAGAGCGATCAGGAGGTGCCACCACCCTTCAAGTCAAAGAAGCAGAATGGTGCTGGTACGTTCATGCTGCCACGTGCACTAAGAGGACATTTGCGCAAAGTGAGCTGCGTTCTAAATTCTCTGAGGACGCCTGAGAGGAGGGCCATTCGGAAGATTGTTGAGCAATCCAGAGATAAAGGGACTTACTTTGGCTGCCTGGTGCAGGACTATGTGAGCTTCCTGCAGGAGAACCGCGGCTGCCACACGTCAGGCTTGGACCTGCTGCAGACTCTCAGGCAGTTCATGACTCAGATGAAGTCCTACCTGCTGCAGAGCTCGGAGCTTGACCCACCTATTGAGTCCCTTATCCCTGAAGATCAAATTGATCAGGTGATGGAGAAAGCCATGCACAAGTGTGTGCTGAAGCCCCTGAAGCCTGTGATAGAGGCCGCTCTGCGGGACTTCCAGGTGGGCAGCGGGACATGGCAGCAGCTGAAGGAGAATCTGGTTTTGGCCAAATCCAAGCAGCCCCAGGAGATGGGCGTGGATGGTGCTCTGCCTCCTGACCCTGTGGCCATAGAGAAGATTCGCCACAAGTTCCACAACATGTGCAAGATGTACTCACCAGAGAAAAAAGTGTCTCTGCTTCTCAGTGTGTGCAAGCTTATCTACACCATAATGGAGAACAACTCAGGGAGGATGTATGGGGCAGATGACTTCCTGCCCATGTTGACGTATGTGATGGCCCAGTGTGACATGCCACAGTTGGATGCTGAAATACAGTACATGATGGAGTTACTGGACCCATCACTGCTTCATGGAGAAGGAGGTTATTACCTGACAAGTGCATATGGGGCAATGTCTCTCATCAAGAACTTCCAGGAGGACCAGGCAGCTCGTGTGCTGAGCTCTGAGACCCGTAACACGCTGCACCAGTGGCACCGCAGACGCACGACCCAGCGTACCACACCATCTGTGGATGATTTCCAGAACTACTTGCGGGTGGCACTGCAAGATGCAAGCAATGGCTGCACAGCCAAAACCCTTCAGGTTCAACCTTACGCCACAACGGAGGATGTGTGTCAGATATGCGCGGACAAGTTTAAAGTTTCGGACCCAGAGAACTACGCCCTTTTCCTCTTGACAGATGAAACCACACAGCAGCTTGCCATGGACACTCACCCACAGAGGATCAAGGCTGAGCTGCATAGCCGCCCACAGCCACAACTGTTCTACTTTGTGTACCGCCAGATCCAAAACCTCACTGTCCCTTCAGACCAGCTCAATGACAACACTTCATCCAACTGAGAGAGCAAACCTGAATTCCATCAGGTGCTCCTTCTCAACCACATTTATTCATCTCCTTCCTTAGGAACACTGCTAACATCTGCACTGTTATGAAAAAAGCTGGAGGGAAGCGGAAAATGTGCTTGGAGGGAAATAGGGAAGGAAGGATGTGTCTGACAGATGCAGCATTTTTTATGCTCTGTCTTCACTATTTTCAAAACGTTTTGGGAAGTTGCACACGACCATCACGAGAGAATAGCTGTATCCAAACTGCAAATGTTACAGTATGCCTGTTTATTTCTTCATGAATGCCCAAACATACACATTGTGTAAGCTTTGCACATTCCACATTAAA

Function

symbol description
rin2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RIN2 (Ras and Rab interactor 2).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10958668_10973745.mRNA True 3145 mRNA 0.51 10 10958334 10973745

Neighbor

gene id symbol gene type direction distance location
CI01000012_10947838_10952009 SLC17A5 coding downstream 6325 10947838 ~ 10952009 (-)
CI01000012_10939589_10944243 EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 coding downstream 14091 10938955 ~ 10944243 (-)
CI01000012_10934571_10937915 NA coding downstream 20419 10934499 ~ 10937915 (-)
CI01000012_10837437_10841732 NA coding downstream 116530 10837415 ~ 10841804 (-)
CI01000012_10799203_10801485 NA coding downstream 156797 10798778 ~ 10801537 (-)
CI01000012_10993043_10996095 NA coding upstream 18726 10992471 ~ 10996095 (-)
CI01000012_11000305_11008211 SLC24A3 coding upstream 25933 10999678 ~ 11009837 (-)
CI01000012_11047566_11050458 NA coding upstream 73643 11047388 ~ 11052412 (-)
CI01000012_11068977_11070913 NA coding upstream 95116 11068861 ~ 11071329 (-)
CI01000012_11088423_11089301 NA coding upstream 114396 11088141 ~ 11090192 (-)
G75892 NA non-coding downstream 30662 10922722 ~ 10927672 (-)
G75875 NA non-coding downstream 35988 10920221 ~ 10922346 (-)
G75814 NA non-coding downstream 161680 10796420 ~ 10796654 (-)
G75607 NA non-coding downstream 167125 10764163 ~ 10791209 (-)
G75796 NA non-coding downstream 194254 10714098 ~ 10764080 (-)
G75931 NA non-coding upstream 145775 11119520 ~ 11119825 (-)
G75932 NA non-coding upstream 146198 11119943 ~ 11121104 (-)
G75933 NA non-coding upstream 147559 11121304 ~ 11121901 (-)
G75944 NA non-coding upstream 161243 11134988 ~ 11135220 (-)
G75955 NA non-coding upstream 176604 11150349 ~ 11150578 (-)
G75608 NA other downstream 337463 10611915 ~ 10620871 (-)
G74982 NA other downstream 1382362 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 1556366 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1874845 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1884877 9071371 ~ 9073457 (-)
CI01000012_12047175_12052116 NA other upstream 1075299 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1105191 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 1980701 12954446 ~ 12957833 (-)
G77287 NA other upstream 2645531 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001687 NA coding CM030143.1 CM030143.1 12475188 ~ 12503194 (+)