G162604


Basic Information

Item Value
gene id G162604
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35197077 ~ 35197987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220267
tttattagaaacatctcactggccactttatcagaaacaacTATATATTATCTTTAGAATTCCATCTACTGGaccttttattagaaacacctgcctaATAGCTTGTACTTCCAATtacaggccactttattagaaacactgcactggtcaaATTATTAGAGACACCTATTCATCTTGGCcaccttattagaaacactgtttttggatgcccacttactggccactatatcagaaacacctaacaTCTATTATCTTGTACT

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220267 True 260 lncRNA 0.35 2 35197077 35197987

Neighbor

gene id symbol gene type direction distance location
pepd pepd coding upstream 358050 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 847197 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 881853 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 979274 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 997305 34176108 ~ 34199772 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 351905 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 588343 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 690967 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 797985 35995972 ~ 36064422 (+)
prtg prtg coding downstream 875819 36073806 ~ 36110407 (+)
G162599 NA non-coding upstream 21167 35161381 ~ 35175910 (+)
G162597 NA non-coding upstream 103682 35091871 ~ 35093395 (+)
LOC111194737 NA non-coding upstream 242942 34945644 ~ 34954135 (+)
G162583 NA non-coding upstream 287969 34908737 ~ 34909108 (+)
G162581 NA non-coding upstream 304769 34844287 ~ 34892308 (+)
G162609 NA non-coding downstream 36242 35234229 ~ 35234704 (+)
G162610 NA non-coding downstream 36303 35234290 ~ 35235088 (+)
G162617 NA non-coding downstream 119959 35317946 ~ 35319647 (+)
G162620 NA non-coding downstream 142240 35340227 ~ 35340935 (+)
G162635 NA non-coding downstream 243696 35441683 ~ 35446341 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 2477802 32714183 ~ 32719275 (+)
G162032 NA other upstream 2902048 32236316 ~ 32295029 (+)
G162017 NA other upstream 3048887 32068862 ~ 32148190 (+)
efhb NA other upstream 3591587 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 4318750 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 609878 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 914055 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 934428 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 1556198 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2089180 37287167 ~ 37352779 (+)

Expression


Co-expression Network